Locus 2281

Sequence ID	3L_DroMel_CAF1
Location	6,417,549 – 6,417,646
Length	97
Max. P	0.998239

overview

Window 5

Location	6,417,549 – 6,417,646
Length	97
Sequences	5
Columns	103
Reading direction	forward
Mean pairwise identity	87.92
Mean single sequence MFE	-23.56
Consensus MFE	-20.94
Energy contribution	-21.14
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-2.49
Structure conservation index	0.89
SVM decision value	3.04
SVM RNA-class probability	0.998239
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6417549 97 + 23771897
----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC--GUUUUUUUCACGU
----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.(((......))).)))--))......))).. ( -24.30)
>DroSec_CAF1 155568 96 + 1
----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC--GUUU-UUUCACGU
----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.(((......))).)))--))..-...))).. ( -25.00)
>DroEre_CAF1 159867 97 + 1
----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC--GUUUUUUUCACGU
----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.(((......))).)))--))......))).. ( -24.30)
>DroYak_CAF1 168783 99 + 1
----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUUCUUCUUUUCCCCUUUUUAUCACGU
----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.((................)).)))))))).. ( -22.89)
>DroAna_CAF1 159056 85 + 1
UUCCGUGGACCGGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUGGCU------------------
..(((.....)))(((((((..((..(((.....)))..))...))))(((((((.........))))).)).........))).------------------ ( -21.30)
>consensus
____GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC__GUUUUUUUCACGU
....((((((.((((.((((..((..(((.....)))..))...)))))))).))))))..(.(((....))).)............................ (-20.94 = -21.14 +   0.20)

alignment

secondary structure

dotplot

Window 6

Location	6,417,549 – 6,417,646
Length	97
Sequences	5
Columns	103
Reading direction	reverse
Mean pairwise identity	87.92
Mean single sequence MFE	-18.06
Consensus MFE	-14.32
Energy contribution	-14.72
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.67
Structure conservation index	0.79
SVM decision value	0.46
SVM RNA-class probability	0.743238
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6417549 97 - 23771897
ACGUGAAAAAAAC--GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC----
.(((.......))--).......(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))..---- ( -18.20)
>DroSec_CAF1 155568 96 - 1
ACGUGAAA-AAAC--GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC----
.(((....-..))--).......(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))..---- ( -18.70)
>DroEre_CAF1 159867 97 - 1
ACGUGAAAAAAAC--GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC----
.(((.......))--).......(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))..---- ( -18.20)
>DroYak_CAF1 168783 99 - 1
ACGUGAUAAAAAGGGGAAAAGAAGAAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC----
..(((........(((...(((......))).)))...)))...((..((.((((((((...((..(((.....)))..))..)))).)))).))..))---- ( -16.80)
>DroAna_CAF1 159056 85 - 1
------------------AGCCAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCCGGUCCACGGAA
------------------.(((.........((.((((...........))))))((((...((..(((.....)))..))..)))))))(((.....))).. ( -18.40)
>consensus
ACGUGAAAAAAAC__GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC____
.......................(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))...... (-14.32 = -14.72 +   0.40)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:35 2006