Locus 227

Sequence ID 3L_DroMel_CAF1
Location 625,730 – 625,830
Length 100
Max. P 0.998807
window337

overview

Window 7

Location 625,730 – 625,830
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.23
Mean single sequence MFE -27.40
Consensus MFE -26.05
Energy contribution -26.05
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.86
Structure conservation index 0.95
SVM decision value 3.23
SVM RNA-class probability 0.998807
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 625730 100 + 23771897
--------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC
--------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10)
>DroVir_CAF1 56211 114 + 1
-UCUUUGUGUGUCGUCUA--UCU---CUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUAUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC
-....((.((((((((.(--((.---..)))..))).((((((.((((((((((..((((((.(((((((...)))).))).))))))..)))))))))).))))))....).)))))). ( -30.60)
>DroEre_CAF1 39281 100 + 1
--------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC
--------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10)
>DroWil_CAF1 49302 120 + 1
UUGUUUUUUUUUCAUACAUUUUUUUGAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC
..........(((((.((((.....))))...((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).)))))))))))))...... ( -29.40)
>DroYak_CAF1 41472 100 + 1
--------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC
--------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10)
>DroAna_CAF1 46121 100 + 1
--------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUUAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC
--------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10)
>consensus
____________________ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC
...............................(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... (-26.05 = -26.05 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:50 2006