Locus 2269

Sequence ID 3L_DroMel_CAF1
Location 6,335,273 – 6,335,376
Length 103
Max. P 0.539937
window3506

overview

Window 6

Location 6,335,273 – 6,335,376
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.56
Mean single sequence MFE -22.40
Consensus MFE -14.61
Energy contribution -14.25
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.38
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.539937
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6335273 103 - 23771897
-----AGUUGCA------GUUGCAGUUUACAUG-GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAGU-----CUCGGCACAAAGGAA
-----((((((.------...(((((((((...-)))))))))))))))..(((.((((.(((......(((((.((((...........)))).)))))-----....))).))))))) ( -23.90)
>DroVir_CAF1 113379 107 - 1
ACUGGCACUGAA------GUCGGACUUUACAAGAGUAAAUUGUGCAACUUGUUCGCUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAAU-----CU--GGACAAAAGAA
.(((((......------)))))..(((((....)))))((((((((...(....)...))))))))...(((((((..((...(((((....))))).)-----))--))))))..... ( -23.20)
>DroGri_CAF1 103241 102 - 1
-----GACUGAA------GUUGGACUUUACAAGAGUAAAUUGUGCAACUUGUUCGCUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUAUGCAAU-----CU--GCACAAAAGAA
-----.....((------((((.(((((((....)))))..)).))))))....((...(((((((....((((.(((.....))).)))).))))))).-----..--))......... ( -20.30)
>DroEre_CAF1 101796 109 - 1
-----AGUUGCAGUUGCAGUUGCAGUUUACAUG-GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAGU-----CUCGGCACAAAGGAA
-----....((((((((....(((((((((...-)))))))))))))).)))((.((((.(((......(((((.((((...........)))).)))))-----....))).)))))). ( -24.80)
>DroWil_CAF1 121287 96 - 1
-----------------------GAUUUGCCGA-GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAGCAAACAAUCUGCACAAAGGAA
-----------------------......((..-.....(((((((.....((((......(((.......)))....))))..))))))).(((((((........)))))))..)).. ( -19.90)
>DroMoj_CAF1 110216 107 - 1
ACGGCUACUCAA------GUCCGACUUUACAAGAGUAAAUUGUGCAACUUGUUCGCUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAAU-----CU--GCACAAAGGAA
.(((((.....)------).)))..(((((....)))))(((((((..((((.((.(((.(((((...(((.....)))....))))).))))).)))).-----.)--))))))..... ( -22.30)
>consensus
_____AACUGAA______GUUGGACUUUACAAG_GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAAU_____CU__GCACAAAGGAA
.........................(((((....)))))((((((....((..((.(((((....))))).))..)).......(((((....)))))...........))))))..... (-14.61 = -14.25 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:16 2006