Locus 2247

Sequence ID 3L_DroMel_CAF1
Location 6,238,537 – 6,238,653
Length 116
Max. P 0.631291
window3474

overview

Window 4

Location 6,238,537 – 6,238,653
Length 116
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 81.66
Mean single sequence MFE -33.14
Consensus MFE -20.63
Energy contribution -20.51
Covariance contribution -0.12
Combinations/Pair 1.26
Mean z-score -1.84
Structure conservation index 0.62
SVM decision value 0.20
SVM RNA-class probability 0.631291
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6238537 116 + 23771897
UUCAAGAUUUACUGGCGCCAUCUAG-GGCCUUAUACUUGAGCCAGUUGCGCUUAUAAAAAAUGCCGCUAGGGGCGCUAAAAAGCAAUGUGUAGAAUACAUUUGACGUGUAGAAGACA
.......((((((((((((.(((((-(((........((((((....).)))))........))).))))))))))))......(((((((...)))))))......)))))..... ( -32.99)
>DroSec_CAF1 4602 117 + 1
UUCAAGAGAUACUAGCGCCAUCUAGCGGCCUUUUUCCUAAUACAGUUCCGCUUAUGAAAACUGCCGCUAGAGGCGCUAGAAAACAAUGUGUAGAAUACGUUUGACGUGUAGAAGACA
(((........((((((((.(((((((((..(((((.(((...........))).)))))..)))))))))))))))))...............(((((.....))))).))).... ( -41.10)
>DroSim_CAF1 4599 117 + 1
UUCAAGAGAUACUGGCGCCAUCUAGCGGCCUCUUGCUUAAUACAGUUGCGCCUUUGAUAACUGCCGCUAGGGGCGCUAGAAAACAAUGUGUAGAAUACAUUUGACGUGUAGAAGACA
...........((((((((.(((((((((..............(((((((....)).)))))))))))))))))))))).........(((....(((((.....)))))....))) ( -36.23)
>DroEre_CAF1 4701 116 + 1
UUUAAAAGAUAGUGGCGGCCUCUAG-UGUCAUAAGCGAAAAUCAGUUGAGCUUAUAAAAACUGCCGCUAGGAGCGCUAAUAAGCAAUGUGUAGAAUAUAUUUGACGUGUAGAAGAGA
.........(((((((((((....)-.)))((((((..((.....))..)))))).......))))))).....(((....))).(..(((.(((....))).)))..)........ ( -22.00)
>DroYak_CAF1 4884 116 + 1
UAUAAGAGAUACUGGCGCCCUCUAG-GGUCGCUUCCAUAAACCAGUUGCGCUUUCAAAAACUGCCGCUAGGGGCGCUAGAAAGCAGUGUGUAGAAUAUAUUUUACGUGUAGAGUAAA
...........(((((((((.((((-((......))......(((((...........)))))...)))))))))))))......(..(((((((....)))))))..)........ ( -33.40)
>consensus
UUCAAGAGAUACUGGCGCCAUCUAG_GGCCUUUUGCUUAAAACAGUUGCGCUUAUAAAAACUGCCGCUAGGGGCGCUAGAAAGCAAUGUGUAGAAUACAUUUGACGUGUAGAAGACA
...........((((((((.(((((.(((.................................))).))))))))))))).....(((((((...)))))))................ (-20.63 = -20.51 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:43 2006