| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,228,445 – 6,228,536 |
| Length | 91 |
| Max. P | 0.567298 |
| Location | 6,228,445 – 6,228,536 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 81.68 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -9.59 |
| Energy contribution | -11.65 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6228445 91 + 23771897 AUUU-UUUGCCCCUUGGUUUAUUUGUGUUU-UUUCAUGAGAAAACCUUGGGUUGGGCAAAAUUUCGGCAGUUUCUGUGAACCUUUUUUUUUU-U-- ...(-(((((((((.(((((.((..((...-...))..)).)))))..))...)))))))).((((.(((...)))))))............-.-- ( -21.00) >DroSec_CAF1 18666 94 + 1 AUUUUUUUGCCCCCUGGUUUAUUUGUGUUUUUUUCAUGAGAAAACCUUGGGUUGGGCAAAAAUUCGGCAGUUUCUGUGAACCUUUUUUUUUUCU-- ...(((((((((((((((((.((..((.......))..)).)))))..)))..)))))))))((((.(((...)))))))..............-- ( -23.90) >DroSim_CAF1 19173 92 + 1 AUUU-UUUGCCCCCUGGUUUAUUUGUGUUU-UUUCAUGAGAAAACCUUGGGUUGGGCAAAAAUUCGGCAGUUUCUGUGAACCUUUUUUUUUUCU-- ..((-(((((((((((((((.((..((...-...))..)).)))))..)))..)))))))))((((.(((...)))))))..............-- ( -24.40) >DroEre_CAF1 20167 82 + 1 AUUU-UU--GCCUCUAGAUUUUUUGUGUUGUUUUCAUGAGAAAACCUUGGGUUGGGCACAAAUUCGGCAUUUUCUGUGAACCUUU----------- ....-.(--(((....((...(((((((.((((((....))))))((......))))))))).))))))................----------- ( -14.40) >DroYak_CAF1 18876 91 + 1 AUUU-UUUGCCCUCCGGUUUAUUUGUGCUUUUUUCAUGAGAAAACCUUGGGUUGGGCAAAAAUUCGGCACUUUCUGUGAACCUUUUUUCUU--U-- ..((-(((((((.(((((((.((..((.......))..)).)))))...))..)))))))))...(((((.....)))..)).........--.-- ( -23.00) >DroAna_CAF1 20056 91 + 1 AUUU-U-CGCGAUGUUGUUUAU-CGUAUUU-UUUCAGAAG-AAACCUUGGGAUGGGCAAAAUUUCAGCGGUUUCUCUGAAUUUUUGUUUUUAUUAC ....-.-.((((((.....)))-)))....-.((((((.(-((((((((..((.......))..))).))))))))))))................ ( -24.70) >consensus AUUU_UUUGCCCCCUGGUUUAUUUGUGUUU_UUUCAUGAGAAAACCUUGGGUUGGGCAAAAAUUCGGCAGUUUCUGUGAACCUUUUUUUUUU_U__ .....(((((((((((((((.((((((.......)))))).)))))..)))..)))))))..((((.((.....))))))................ ( -9.59 = -11.65 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:40 2006