Locus 224

Sequence ID 3L_DroMel_CAF1
Location 620,536 – 620,630
Length 94
Max. P 0.999113
window334

overview

Window 4

Location 620,536 – 620,630
Length 94
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 86.19
Mean single sequence MFE -26.72
Consensus MFE -22.98
Energy contribution -23.18
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -3.05
Structure conservation index 0.86
SVM decision value 3.38
SVM RNA-class probability 0.999113
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 620536 94 + 23771897
GUCGUUGUCGACGUCUUUUUCCGACAUCUAACCAAGUCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUUCACA------------------UCCAUCC
((((....)))).........((((..........))))(((((((....)))))))((((((((...))))))))...........------------------....... ( -23.10)
>DroSec_CAF1 31804 112 + 1
GUCGUUGUCGACGUCUCUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCAUAUCCACAUCCACAACCACGUCACGUUCCAUCC
((.(((((.((((((.......))))))......(((((.(((((...((.....)).....))))))))))..................))))).)).............. ( -29.10)
>DroSim_CAF1 30214 106 + 1
GUCGUUGUCGACGUCUCUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCA------CAUCCACAACCACGUCCACGUCCAUCC
((.(((((.((((((.......))))))......(((((.(((((...((.....)).....)))))))))).......------.....))))).)).............. ( -29.10)
>DroEre_CAF1 34204 112 + 1
GUCGUUGUCGACGUCUUUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUCCACAUCCACAUCCACGUCCGCGUCCAUCC
(.(((.(.(((((((.......))))))......(((((.(((((...((.....)).....))))))))))..........................).).))).)..... ( -27.00)
>DroYak_CAF1 35985 100 + 1
GUCGUUGUCGACGUCUUUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUCCACAUCCA------------CGUCCAUCC
((((....))))..........(((((............(((((((....)))))))((((((((...))))))))..............)------------))))..... ( -25.30)
>consensus
GUCGUUGUCGACGUCUUUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUCCACAUCCACA_CCACGUC__CGUCCAUCC
...((((..((((((.......)))))))))).......(((((((....)))))))((((((((...)))))))).................................... (-22.98 = -23.18 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:47 2006