| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,215,917 – 6,216,034 |
| Length | 117 |
| Max. P | 0.739103 |
| Location | 6,215,917 – 6,216,034 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.79 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -13.10 |
| Energy contribution | -11.93 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.739103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6215917 117 + 23771897 CUAACAU---UUUAACUCACUUAGCUUCUAGGAUUACAGAUCCCACUAUAAUGGGACAAUUGGCCAAACAUAAAAGGGCCAACUUCCAGUUGUAGUACAUGGCUACGCUGACACUUGAAA ......(---(((((.((((.(((((....(((((...))))).((((((((.(((...((((((...........))))))..))).))))))))....))))).).)))...)))))) ( -29.00) >DroGri_CAF1 6211 113 + 1 AC----G---UUUAACUUACUUUGCUUCGAGUAUGACGGAUCCAACAAUGAUCGGACAAUUGGCCAGACACAGCAGCGCCAGUUUCCAAUUAUAGUACAUGGAUACCGUAAUGCCCGUUA ..----.---.................((.((((.(((((((((((.(((((.(((.((((((((..........).)))))))))).))))).))...))))).)))).)))).))... ( -30.40) >DroWil_CAF1 6920 119 + 1 -UGAUUUCAAUAAUACUCACUUGGCCUCCAAAAUAACUGAGCCAACAAUAAUGGGACAAUUGGCCAAACAUAAUAAGGCCAAUUUCCAACUGUAAUACAUGGAUACGGUAACACCGGAAA -...((((.....(((....(((((.((..........)))))))........(((.((((((((...........)))))))))))....)))...........(((.....))))))) ( -24.80) >DroYak_CAF1 6452 117 + 1 ACAAUAU---CACAACUCACUUGGCUUCCAGGAUCACAGAUCCCACUAUAAUGGGACAAUUGGCCAAGCAUAACAGGGCCAACUUCCAGUUGUAGUACAUGGCAACGCUGACACUUGAUA ....(((---((........(..((((((((((((...))))).((((((((.(((...((((((..(.....)..))))))..))).))))))))...))).)).))..)....))))) ( -31.10) >DroMoj_CAF1 6308 114 + 1 AUU---G---AUUCACUCACUUCGCCUCGAGUAUGACCGAGCCAACAAUAAUGGGGCAGUUGGCCAAACACAGCAACGCCAGCUUCCAAUUAUAGUACAUGGAAACCGAUACGCCCGAAA ...---.---.(((.........(.((((........)))).)..........(((((((((((.............)))))))..........(((...(....)...)))))))))). ( -25.32) >DroAna_CAF1 6853 109 + 1 -----------GCAACCCACUUGGCUUCCAGGAUGACGGAUCCCACAAUAAUGGGGCAAUUGGCCAAACACAACAAGGCCAACUUCCAGUUGUAGUACAUGGCAACGGUGACACUGGAGA -----------.....((....)).((((((..(.((((((((((......)))))...((((((...........))))))..))).(((((........))))).)).)..)))))). ( -32.30) >consensus AU____U___UUUAACUCACUUGGCUUCCAGGAUGACAGAUCCAACAAUAAUGGGACAAUUGGCCAAACACAACAAGGCCAACUUCCAAUUGUAGUACAUGGAAACGGUGACACCCGAAA ....................((((...)))).............((.(((((.(((...((((((...........))))))..))).))))).))........................ (-13.10 = -11.93 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:32 2006