Locus 2230

Sequence ID 3L_DroMel_CAF1
Location 6,174,356 – 6,174,448
Length 92
Max. P 0.524167
window3453

overview

Window 3

Location 6,174,356 – 6,174,448
Length 92
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 69.67
Mean single sequence MFE -26.42
Consensus MFE -12.88
Energy contribution -13.92
Covariance contribution 1.04
Combinations/Pair 1.32
Mean z-score -1.60
Structure conservation index 0.49
SVM decision value -0.02
SVM RNA-class probability 0.524167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6174356 92 - 23771897
---UAAAUGUGGGGUAAGGUCUGCCAAAGGGGG-CUACCGAAGUGACAGAGAAUGACACUCUGUUCUCGGCCUACUCAUAUCCCAUACAAAUC----------------AGA
---....(((((((((.(((((.(....).)))-)).((((.(.(((((((.......))))))))))))........)))))))))......----------------... ( -29.10)
>DroSec_CAF1 14081 92 - 1
---UAAAUGUGGGGUAAGGUCUGCCAAAGGAAG-CUACCGAAUUGACAGAGAAUGACACUCCGUUCUCGGCCUACUCAUAUCCCAUCCAAAUC----------------AGG
---.....((((((((.(((..(((...((...-...)).........(((((((......))))))))))..)))..)))))))).......----------------... ( -26.60)
>DroSim_CAF1 14951 92 - 1
---UAAAUGUGGGGUAAGGUCUGCCAAAGGGAG-CUACCGAAUUGACAGAGAAUGACACUCCGAUCUCGGCCUACUCAUAUCCCAUCCAAAUC----------------AGG
---.....((((((((.(((..(((...((...-...)).........((((.((......)).)))))))..)))..)))))))).......----------------... ( -23.90)
>DroEre_CAF1 15195 103 - 1
---UAUAUGUGGUG----GUCUGCCAAUGGUAUUCUGAUAAC-GAAUACACGAUGACACUCUGUUCUUGGCCUACUCAUAUAGCUCACAGAACAUU-UCUUACUGCCGCAUU
---...((((((..----((.((.((.((((((((.......-)))))).)).)).))...((((((((..(((......)))..)).))))))..-....))..)))))). ( -26.20)
>DroYak_CAF1 14110 108 - 1
UUGUAUAUGUUGGGUAAUGUCUGCCAAAGG----CUAAUGGAGUGACAGAGAAUGACACUAUGUUCUUGGCCAACUUAUAUUGCCUCCAGAUAAUUUUUUUACCGCCGCAUG
.....(((((.((((((((((((....(((----(.....((((....((((((........)))))).....)))).....)))).))))))......))))).).))))) ( -26.30)
>consensus
___UAAAUGUGGGGUAAGGUCUGCCAAAGGGAG_CUACCGAAGUGACAGAGAAUGACACUCUGUUCUCGGCCUACUCAUAUCCCAUCCAAAUC________________AGG
........((((((((..((..(((...((.......)).........(((((((......))))))))))..))...)))))))).......................... (-12.88 = -13.92 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:23 2006