Locus 223

Sequence ID 3L_DroMel_CAF1
Location 619,975 – 620,069
Length 94
Max. P 0.856303
window333

overview

Window 3

Location 619,975 – 620,069
Length 94
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 74.64
Mean single sequence MFE -23.07
Consensus MFE -13.44
Energy contribution -13.38
Covariance contribution -0.06
Combinations/Pair 1.14
Mean z-score -1.93
Structure conservation index 0.58
SVM decision value 0.81
SVM RNA-class probability 0.856303
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 619975 94 - 23771897
GC------UGGGAAAGCGAAGGCUG------------UUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCGCACAAUUGAAAGGCAGAAAAAAAAA-UGGAAAGAAA
((------(.....)))...(((.(------------((((.(((((((....))))))))))))))).....(((.((....))...)))...........-.......... ( -22.20)
>DroSec_CAF1 31268 90 - 1
GC------UGGGAAAGCGAAGGCUG------------UUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCACACAAUUGAAAGGCAAAAAAAAA-----GAAAGAAA
((------(((...(((....)))(------------((((.(((((((....)))))))))))).))......(((......)))..))).........-----........ ( -20.90)
>DroEre_CAF1 33625 95 - 1
GC------UGGGAAAGCGAAGGCUG------------CUGCAUUAGCAUACAAGUGUUGGGCAGUGCCGCAAAGUCGCACAAUUGAAAGGCAAAAAAGGAAAGAAGAAUGAGA
((------(......((((.(((.(------------((((.(((((((....)))))))))))))))......)))).(....)...)))...................... ( -23.50)
>DroAna_CAF1 39902 103 - 1
AUUUACUUUGGUUAGACAAAGGCUGGCCGCAUGUUGGUUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCGCACAAUUGAAAAGCACCAACAACAA----------C
.........((((((.......))))))...(((((((.((.(((((((....)))))))...(((.(.....).)))...........)))))))))....----------. ( -25.70)
>consensus
GC______UGGGAAAGCGAAGGCUG____________UUGCAUUAGCAUACAAGUGUUGGGCAGCGCCACAAAGUCGCACAAUUGAAAGGCAAAAAAAAAAA___GAAAGAAA
........(((...(((....))).............((((.(((((((....)))))))))))..)))....(((.((....))...)))...................... (-13.44 = -13.38 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:46 2006