Locus 2221

Sequence ID 3L_DroMel_CAF1
Location 6,139,918 – 6,140,029
Length 111
Max. P 0.631058
window3443

overview

Window 3

Location 6,139,918 – 6,140,029
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 76.52
Mean single sequence MFE -24.14
Consensus MFE -5.45
Energy contribution -8.05
Covariance contribution 2.60
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.23
SVM decision value 0.20
SVM RNA-class probability 0.631058
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6139918 111 - 23771897
CACUCUCAGUACGAUAUGGUUUCAAUGUACAUCACUCAUACGCCGUGUUGCAAGAGCGCACUUAGGUGGCGUAUGAGUAAUUUAUGCGAAAUCUCACCUACUUUACGUAGC
.................((((((...(((.((.((((((((((((((((.....)))))((....))))))))))))).)).)))..))))))....((((.....)))). ( -30.40)
>DroSec_CAF1 44653 95 - 1
CACUCUCAGUACGAUAUGGUUUCAAUGAACAUCACUCAUACGACCUGUUGCAACAG-------------CGUAUGAGUAAUUUAUGCGAAAGCUCACCAACAUUACG---C
........(((.....((((.............(((((((((..((((....))))-------------))))))))).......((....))..))))....))).---. ( -22.80)
>DroSim_CAF1 46078 95 - 1
CACUCUCAGUACGAUAUGGUUUCAAUGUACAUCACUCAUACGACCUGUUGCAACAG-------------CGUAUGAGUAAUUUAUGCGAAGGCUCACCAACAUUACG---C
........(((.....((((......(((.((.(((((((((..((((....))))-------------))))))))).)).)))((....))..))))....))).---. ( -22.00)
>DroEre_CAF1 48196 111 - 1
CACUCUCAGUAUGAUAUGGUUUCAAUGUGCAUCACUCAUACGCCGUGUUACAACCGCGCACUUUAAUGGGGUAUGAGUAAUUUUGGCGAAAGCUCACCUAAUUUUCAUACC
........((((((...(((.............((((((((.((((...................)))).))))))))......(((....))).)))......)))))). ( -28.51)
>DroYak_CAF1 53553 95 - 1
CACUCUCAGUAUGAUAUGGUUUCAAUGUGCAUCACUCAUACGCCGUGUGGCAACACCGCACUUAA--------------AUUUUUGCAAAAA--CACCUACUUUACGUAGU
........((((((....((........)).....))))))...((((((.....))))))....--------------.............--...((((.....)))). ( -17.00)
>consensus
CACUCUCAGUACGAUAUGGUUUCAAUGUACAUCACUCAUACGCCGUGUUGCAACAGCGCACUU______CGUAUGAGUAAUUUAUGCGAAAGCUCACCUACUUUACGUA_C
.................(((.............(((((((((...........................))))))))).......((....))..)))............. ( -5.45 =  -8.05 +   2.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:12 2006