Locus 2216

Sequence ID 3L_DroMel_CAF1
Location 6,107,057 – 6,107,153
Length 96
Max. P 0.829118
window3436

overview

Window 6

Location 6,107,057 – 6,107,153
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.31
Mean single sequence MFE -28.48
Consensus MFE -23.34
Energy contribution -22.35
Covariance contribution -0.99
Combinations/Pair 1.35
Mean z-score -1.44
Structure conservation index 0.82
SVM decision value 0.71
SVM RNA-class probability 0.829118
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6107057 96 - 23771897
AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCCGUGGCCUAAGUGAAAUUGCUUUGACCUUUAGCAAUUUUAAAGCCAU--ACUAUC
..(((((......(((....)))((......)))))))......(((((.....((((((((((.........))))))))))..)))))--...... ( -26.10)
>DroSim_CAF1 15111 96 - 1
AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCUGUGGCCUAAGUAAAAUUGAUUUGGCCUUUAGCAAUUUUAAAGCCAC--ACUAUC
..(((((......(((....)))((......))))))).....((((((.....((((((((.............))))))))..)))))--)..... ( -23.12)
>DroEre_CAF1 18361 89 - 1
AGAACGGAUUCCAGCCCCAGGGCGCUCAUCUGCCCGUUGCCCCCCAGGCCUAAGUGAGAUUGCUUA-------AGCAGUUUUAGAGCCAU--ACAAUC
..(((((......(((....)))((......)))))))........(((((((....((((((...-------.)))))))))).)))..--...... ( -25.90)
>DroYak_CAF1 15585 96 - 1
AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCUGAGGCCUAAGUGAAAUUGUUCACAAUUCGAGCAGUUUUAUAGCCAU--ACAAUC
.....((......(((.(((((.((.............))))))).)))....((((((((((((.......))))))))))))..))..--...... ( -29.52)
>DroAna_CAF1 21531 98 - 1
AGAACGGAUUCCAGCCCCAGGGUGCCCAUCUGCCCGUUGCCCCUGAGGCCUAAGCUGAGUUGCUUUUGAGUGAAGCAGCUUUAAUGCCAAGUCCUACC
.....(((((...(((.(((((.((.............))))))).)))....((.((((((((((.....))))))))))....))..))))).... ( -32.92)
>DroPer_CAF1 20516 91 - 1
AGAACGGUUUCCAGCCCUCGGGCGCUCAUCUGCCCGUGGCCCCUGAGGCUUAAGUUGAGUUGCUUCCUUCGCAAGCAGCUUGAAAGCCAU-------C
.............(((..((((((......)))))).)))......(((((...(..((((((((.......))))))))..))))))..-------. ( -33.30)
>consensus
AGAACGGAUUCCAGCCCCAGGGUGCUCAUCUGCCCGUUGCCCCUGAGGCCUAAGUGAAAUUGCUUUCAACUCAAGCAGUUUUAAAGCCAU__ACUAUC
..(((((......(((....)))((......)))))))........(((.....((((((((((.........))))))))))..))).......... (-23.34 = -22.35 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:05 2006