| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,086,561 – 6,086,657 |
| Length | 96 |
| Max. P | 0.779636 |
| Location | 6,086,561 – 6,086,657 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 87.41 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6086561 96 - 23771897 UAAA-GAGUCCUUUAAGUGGUAAACUUAGCAGAAUGAAUGUGCU-UAAGUAUCGAACUUAUAUUCAUUUAUUUUUGAUAUGAAUACUAUUUCUAAUAG ((((-(....)))))(((((((.......(((((((((((....-(((((.....)))))....)))))).))))).......)))))))........ ( -15.84) >DroSec_CAF1 35305 98 - 1 UAAAGGAGUGCUUUAAGUGGUAAACUUAACAGAAUGAAUGGGAUAUGAGUAUCAAACUUAUAUUCAUUUAUUUUAAAUAUGAAUACUAUUGCUGAUAG ...((.((((..((((((.....)))))).(((((((((((.((((((((.....)))))))))))))))))))............)))).))..... ( -20.30) >DroSim_CAF1 36317 94 - 1 UAAAGGAGUCUUUUAAGUGGUAAACUUAACAGAAUGAAUGGGAUAUGAGUAUAGAACUUAUAUUCAUUUAUUUUUAAUAUGAAUACUAUUCCUG---- ...((((((...((((((.....)))))).(((((((((((.((((((((.....))))))))))))))))))).............)))))).---- ( -23.10) >consensus UAAAGGAGUCCUUUAAGUGGUAAACUUAACAGAAUGAAUGGGAUAUGAGUAUCGAACUUAUAUUCAUUUAUUUUUAAUAUGAAUACUAUUCCUGAUAG ...((((((...((((((.....)))))).((((((((((.(((((((((.....))))))))))))))))))).............))))))..... (-16.92 = -17.70 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:44 2006