| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 77,324 – 77,421 |
| Length | 97 |
| Max. P | 0.916373 |
| Location | 77,324 – 77,421 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 96.74 |
| Mean single sequence MFE | -28.59 |
| Consensus MFE | -26.23 |
| Energy contribution | -26.22 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 77324 97 + 23771897 CUAAGCAGAAUACGAUACCUUGUAUGCCCAAAAGGGGGCGACGGCCUCCAAACUAGAUGUUGCAUUGUAUUGUAUUGGAAUGGAAUUCGCGAAAGCA (((..(..((((((((((..(((..........((((((....)))))).(((.....))))))..)))))))))).)..))).....((....)). ( -30.60) >DroSec_CAF1 26958 97 + 1 GUAAGCAGAAUACGAUACCUUGUAUACCCAAAAGGGGGCGACGGCCUCCAAACUAGAUAUUGCAUUGUAUUGUAUUGGAAUGGAAUUCGCGAAAGCA ........((((((((((..((((.........((((((....))))))...........))))..))))))))))............((....)). ( -28.35) >DroSim_CAF1 27851 97 + 1 GUAAGCAGAAUACGAUACCUUGUAUACCCAAAAGGGGGCGACGGCCUCCAAACUAGAUAUUGCAUUGUAUUGUAUUGGAAUGGAAUUCGCGAAAGCA ........((((((((((..((((.........((((((....))))))...........))))..))))))))))............((....)). ( -28.35) >DroEre_CAF1 35993 97 + 1 GUAAGCAGAAUACGAUACCUUGUAUGCCCAAAAGGGGGCGACGGCCUCCGAACUAGAUAUUGCAUUGUAUUGUAUUGGAAUGGAAUUCGCGUAAACA ....((..((((((((((..((((.........((((((....))))))...........))))..)))))))))).((((...))))))....... ( -27.05) >consensus GUAAGCAGAAUACGAUACCUUGUAUACCCAAAAGGGGGCGACGGCCUCCAAACUAGAUAUUGCAUUGUAUUGUAUUGGAAUGGAAUUCGCGAAAGCA ....((..((((((((((..((((.........((((((....))))))...........))))..)))))))))).((((...))))))....... (-26.23 = -26.22 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:05 2006