| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,041,809 – 6,041,903 |
| Length | 94 |
| Max. P | 0.819036 |
| Location | 6,041,809 – 6,041,903 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.25 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.78 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.819036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6041809 94 - 23771897 GGCCAAUUCUUUCAAUAAGGCUUUAUCCAGUUUGGUUAAGCUAAUACACACAC-------AUAC----ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((............(((((((....((.....(((((((((...........-------....----.........)))))))))))....))))))))))... ( -22.36) >DroSec_CAF1 95714 94 - 1 GGCCAGUUCUUUUAACGAGGCUUUAUCCAGUUUGGUUAAGCUAAUGCACACAC-------AUAU----ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((..(((.....)))((((((....((.....(((((((((..((((.....-------....----.....)))))))))))))))....)))))).)))... ( -27.44) >DroSim_CAF1 106854 94 - 1 GGCCAGUUCUUUUAACAAGGCUUUAUCCAGUUUGGUUAAGCUAAUACACACAC-------AUAU----ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((..(((.....)))((((((....((.....(((((((((...........-------....----.........)))))))))))....)))))).)))... ( -22.96) >DroEre_CAF1 97930 105 - 1 GGCCAGUUCUUUUAAUAAGGCUUUAUCCAGUUUGGUUAGGCUAAAACCCACACUAUGUACAUAUGUAUAUUUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((............(((((((....((.....(((((((((......((....((((((....))))))...))..)))))))))))....))))))))))... ( -25.90) >DroYak_CAF1 100998 95 - 1 GGCCAGUUCUUUUAAUAAGGCUUUAUCCAAUUUGGUUAGGCUAAAACACACAC-------AUAUUCA---UUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((............(((((((....((.....(((((((((...........-------.......---.......)))))))))))....))))))))))... ( -22.01) >DroAna_CAF1 105012 84 - 1 GGCCAAUUCU---AAUUUGGUUUUAUCCAGUUUCG----GUUCAUGUACGCAC-------AGGG----G---CUGCAGGUUUAACCGGUAUUAGCCUUAGCCUUU (((.((..((---(((((((((..(((((((..(.----((.(......).))-------.)..----)---)))..)))..)))))).)))))..)).)))... ( -23.30) >consensus GGCCAGUUCUUUUAAUAAGGCUUUAUCCAGUUUGGUUAAGCUAAUACACACAC_______AUAU____ACCUUUGCAGGCUUAACCGGUAUUAGCCUUAGCCUUU (((..(((.....)))((((((....((.....(((((((((...................................)))))))))))....)))))).)))... (-16.75 = -16.78 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:35 2006