Locus 2194

Sequence ID 3L_DroMel_CAF1
Location 6,028,757 – 6,028,877
Length 120
Max. P 0.980957
window3399

overview

Window 9

Location 6,028,757 – 6,028,877
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 72.78
Mean single sequence MFE -31.42
Consensus MFE -19.41
Energy contribution -20.23
Covariance contribution 0.81
Combinations/Pair 1.15
Mean z-score -2.06
Structure conservation index 0.62
SVM decision value 1.87
SVM RNA-class probability 0.980957
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6028757 120 - 23771897
UAAAAAAAAAACAACUGUGCGAAAAGGAAAUGUGACACGGACUAAUGGGUUGGUGCAUUCGCUUACUGCCAGAGUGGUAGCACUGCUUGUAAGCAGCCGUUGCAUUCAAGUAGUGUAAAU
..............(((.(((..(((((...(((.(((.((((....)))).)))))))).)))..)))))).......((((((((((...((((...))))...)))))))))).... ( -33.80)
>DroSim_CAF1 94019 90 - 1
------------------------------UGUGGCAAGGCCUAAUGGGUUGGUGAAUUCGCUUACUGAAAGAGUGGUAGCACUGCUUGUAAGCUGCCGUUGCAUUUAAAUAGUGUAAAU
------------------------------...((((.((((.....)))).........((((((...(((((((....)))).))))))))))))).(((((((.....))))))).. ( -25.00)
>DroEre_CAF1 85275 112 - 1
-------UGUUCAACUGAGCAGAGUAAAAAUGUGGCAAGGCCAAAUGG-GUGGUGCAGUCGCUUACUAAAAGAGUGGCAGCACUGCUUGAAAGCAGCCGUUGCAUUUGAAUAGUUUAAGU
-------(((((....)))))......(((((..((..(((.....((-(..((((.(((((((.......))))))).))))..))).......)))))..)))))............. ( -35.00)
>DroYak_CAF1 88033 112 - 1
-------AGCUCAACUGAGCAACGUAAAAGUGUGGCAAGGCCAAAUGG-UUGGUGCACUCGCUUACUUAAUGAGUGGUAGCACUGCUUGAAAGUAGCCGUUACAUUUAAAUAGUGUAAAU
-------.((((....)))).......(((((((((..((((....))-))(((((((.((((((.....)))))))).)))))(((.......))).)))))))))............. ( -31.90)
>consensus
_______AG_UCAACUGAGCAAAGUAAAAAUGUGGCAAGGCCAAAUGG_UUGGUGCAUUCGCUUACUGAAAGAGUGGUAGCACUGCUUGAAAGCAGCCGUUGCAUUUAAAUAGUGUAAAU
...........................(((((((((..(((..........(((((..((((((.......))))))..)))))(((....))).))))))))))))............. (-19.41 = -20.23 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:30 2006