Locus 2192

Sequence ID 3L_DroMel_CAF1
Location 6,007,659 – 6,007,776
Length 117
Max. P 0.725498
window3397

overview

Window 7

Location 6,007,659 – 6,007,776
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.67
Mean single sequence MFE -35.22
Consensus MFE -23.70
Energy contribution -24.70
Covariance contribution 1.00
Combinations/Pair 1.22
Mean z-score -1.39
Structure conservation index 0.67
SVM decision value 0.41
SVM RNA-class probability 0.725498
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6007659 117 - 23771897
CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACCCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGUGUGUUUUAUUAGCCGUAA---AGCCACGCAGUCCAGU
.......((..((((...((((((((((.((((((..(......)..)))))).....(((((((........)))))))))))))))))....((.....---.))..))))..))... ( -38.80)
>DroSec_CAF1 65138 119 - 1
CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACUCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGCGUGUUUUAUUAGCCAAAAU-CAGCCAAACAGUCCAGU
.......((..(((....((((((((((.((((((..(......)..)))))).....(((((((........)))))))))))))))))....((......-..))...)))..))... ( -37.70)
>DroSim_CAF1 74699 119 - 1
CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACCCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGCGUGUUUUAUUAGCCAAAAU-CAGCCAAGCAGUCCAGU
.......((..(((....((((((((((.((((((..(......)..)))))).....(((((((........)))))))))))))))))....((......-..))...)))..))... ( -38.00)
>DroEre_CAF1 66542 109 - 1
CCUCGAAGGGAUGUGAGAAAAAUGCCCCUGCUGGUUUCACUCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAGCAAGUCCGGCGUUUUUUAUUAGCCUUAAUUCAGA---AC--------
.......((((((((((......(((......)))....)))))))).)).....((((((((((((.........))))(((...........)))..))))))))---..-------- ( -30.20)
>DroYak_CAF1 66458 88 - 1
CUGAGGAUGGCUGUGAGAUUGGAGCACCAGCUGCUUUCACCAGGGUGACCAGCUACUUGGAUUGGAUCCAGGCCAACUCUGGCAUCUC--------------------------------
....(((((.(...(((.((((......(((((...((((....)))).))))).(((((((...)))))))))))))).).))))).-------------------------------- ( -31.40)
>consensus
CCUCCAAGGGAUGUGAGAAAAAUGCGCCUGCUGGUUUCACCCGCGUCACCAGCUAUCUGGAUUGGAUCAAGAACCAGUCCGGCGUGUUUUAUUAGCCAAAAU_CAGCCA_ACAGUCCAGU
(((....)))........((((((((((.((((((..(......)..)))))).....(((((((........))))))))))))))))).............................. (-23.70 = -24.70 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:28 2006