Locus 2181

Sequence ID 3L_DroMel_CAF1
Location 5,942,315 – 5,942,408
Length 93
Max. P 0.687061
window3382

overview

Window 2

Location 5,942,315 – 5,942,408
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.75
Mean single sequence MFE -33.65
Consensus MFE -15.72
Energy contribution -16.13
Covariance contribution 0.42
Combinations/Pair 1.18
Mean z-score -1.95
Structure conservation index 0.47
SVM decision value 0.32
SVM RNA-class probability 0.687061
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5942315 93 - 23771897
CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCAAGCAGUGACUCCAAUCC---CGAAGAGGAGCAGGAUGA---GGAGGCAGAAGAG
.........((.(((((((((((((((((((.((....)).))).))))))...(((..(((---......)))...))))))---)).))))).)).. ( -34.60)
>DroGri_CAF1 37500 93 - 1
CAAAAGUCGCUGCUGUCGCUGAACUGCUGGCAGAGCAGUCAGCAUAGU---GACUCCAGCUGCAGCGAGGAGGCGCUACCCGACCAGAA---CGAGGAG
......(((...((((((((((.(((((.....)))))))))).((((---(.((((.((....))..)))).)))))...)).)))..---))).... ( -35.20)
>DroEre_CAF1 559 87 - 1
CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCGAGCAGUGACUCCAAUCC---CGAAGAGGA------GGA---GGACGCAGAAGAG
.........((((.((((.((.(((((((((.((....)).))).))))))..((((.....---......)))------)))---))))))))..... ( -31.10)
>DroYak_CAF1 559 93 - 1
CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCGAGCAGUGACUCCAAUCC---CGAAGAGGAGGAGGAGGA---GGACGCAGAAGAG
.........((((.((((.((.(((((((((.((....)).))).))))))..((((..(((---......)))...))))))---))))))))..... ( -35.60)
>DroMoj_CAF1 562 90 - 1
CAAAAGUCGCUGCUGUCGCUCAACUGUUGGCAGAGCAGUCAGCCCAGC---GACUCCAGCGGCAAUGAAGAGGUAACGGCCGA---AGA---CCAAGAU
.....(((((((..((((((.....((((((......))))))..)))---)))..)))))))........(((....)))..---...---....... ( -31.70)
>DroAna_CAF1 562 93 - 1
CAAAAAUCCCUGCUGUCACUCAACUGCUGGCAGACCAGCCAGCCUAGCAGUGACUCCAAUCC---GGAGGACGAGGACGAGGU---GGUGGCCGAGGAG
......((((.((..((((((.(((((((((..........))).))))))..((((.....---)))).........)).))---))..)).).))). ( -33.70)
>consensus
CAAAAGUCCCUGCUGUCCCUCAACUGCUGGCAGAGCAGUCAGCCGAGCAGUGACUCCAAUCC___CGAAGAGGAGCAGGAGGA___GGA_GCAGAAGAG
....((((.(((((((......)).((((((......))))))..))))).))))............................................ (-15.72 = -16.13 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:13 2006