| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,941,317 – 5,941,427 |
| Length | 110 |
| Max. P | 0.625088 |
| Location | 5,941,317 – 5,941,427 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 92.11 |
| Mean single sequence MFE | -38.03 |
| Consensus MFE | -32.08 |
| Energy contribution | -32.50 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5941317 110 - 23771897 -----GCCAGGAA--CCCUCCUCCAUGGAUGAGGGUUGGCCAGAGAACGCUUCACUUACAUGUGAUUAGCGAUUCGAGUGGCUCUCAUUAAUUUUUCAAGUGCGGCUCGUGGAGCUC -----((((...(--(((((.((....)).))))))))))..(((..((((((((......))))..))))...(((((.((.((.............)).)).))))).....))) ( -38.02) >DroSec_CAF1 51318 110 - 1 -----GCCAGGAA--CCCUCCUCCAUGGAUGAGGGUUGGCCAGAGAACGCUUCACUUACAUGUGAUUAGCGAUUCGAGUGGCUCUCAUUAAUUUUUCAAGUGCGGCUCGUGGAGCUC -----((((...(--(((((.((....)).))))))))))..(((..((((((((......))))..))))...(((((.((.((.............)).)).))))).....))) ( -38.02) >DroSim_CAF1 36361 110 - 1 -----GCCAGGAA--CCCUCCUCCAUGGAUGAGGGUUGGCCAGAGAACGCUUCACUUACAUGUGAUUAGCGAUUCGAGUGGCACUCAUUAAUUUUUCAAGUGCGGCUCGUGGAGCUC -----((((...(--(((((.((....)).))))))))))..(((..((((((((......))))..))))...(((((.(((((.............))))).))))).....))) ( -42.02) >DroEre_CAF1 35289 110 - 1 -----ACCAGGAA--CCCUCCUCCAUGGAUGAGGGUUGGCCAGAGAACGCUUCACUUACAUGUGAUUAGCGAUUCGAGUGGCUCUCAUUAAUUUUUCAAGUGCGGCUCAUGGAGCUC -----.(((((.(--(((((.((....)).))))))...))...(((((((((((......))))..)))).)))((((.((.((.............)).)).)))).)))..... ( -37.62) >DroYak_CAF1 35955 112 - 1 -----ACCAGGAAUACCCUCCUCCAUGGAUGAGGGUUGGCCAGAGAACGCUUCACUUACAUGUGAUUAGCGAUUCGAGUGGCUCUCAUUAAUUUUUCAAGUGCGGCUCGUGGAGCUC -----.(((((...((((((.((....)).))))))...))...(((((((((((......))))..)))).)))((((.((.((.............)).)).)))).)))..... ( -38.92) >DroAna_CAF1 63586 111 - 1 AAACUGUAGGGUA--UCCUGC----CGGAGGAGGGUUGGACGUCGAACGCUUCACUUACAUGUGAUUAGCGAUUCGAGUGGCUCUCAUUAAUUUUUCAAGUGCGGCUCGUGGAGCUC ..((((((((...--.)))))----.....(((((((..((.(((((((((((((......))))..)))).))))))))))))))............)))..(((((...))))). ( -33.60) >consensus _____GCCAGGAA__CCCUCCUCCAUGGAUGAGGGUUGGCCAGAGAACGCUUCACUUACAUGUGAUUAGCGAUUCGAGUGGCUCUCAUUAAUUUUUCAAGUGCGGCUCGUGGAGCUC ......(((((....(((((.((....)).)))))....))...(((((((((((......))))..)))).)))((((.((.((.............)).)).)))).)))..... (-32.08 = -32.50 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:12 2006