Locus 2171

Sequence ID 3L_DroMel_CAF1
Location 5,908,147 – 5,908,261
Length 114
Max. P 0.772998
window3369

overview

Window 9

Location 5,908,147 – 5,908,261
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 78.83
Mean single sequence MFE -47.27
Consensus MFE -22.00
Energy contribution -22.48
Covariance contribution 0.48
Combinations/Pair 1.46
Mean z-score -2.38
Structure conservation index 0.47
SVM decision value 0.53
SVM RNA-class probability 0.772998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5908147 114 + 23771897
GGCCUCCAGGGAUAUUUCCCUGGGAAUGCCCGCUUGAAACCAGGCGGCUCCCUUAAGCUCCUGCUGCUCGGCUAGGCUGAGAUUAUCCAGGCGCAGGGCACUGUGGCCGGGAAA
((((((((((((....))))))))..((((((((((....)))))...........((.((((...((((((...))))))......)))).)).)))))....))))...... ( -53.70)
>DroVir_CAF1 438 114 + 1
CACCUCCAGUGAGAUCUCUCUGGGUAUGCCCGCCUGAUACCAGGCGGCACCUUUCAGCUCUUGCUGCUCGGCCAGGCUCAGGUUGUCCAGGCGCAAUGGUGAAUUCGCCGCAAA
....(((((.((....)).)))))..((((((((((....)))))(((((((...(((.((.(((....))).))))).))).))))..)).)))..((((....))))..... ( -41.90)
>DroGri_CAF1 626 114 + 1
CACCUCCAGUGAGAUCUCACGUGGUAUGCCCGCCUGAUACCACGCGGCGCCCUUCAGCUCCUGCUGCUCCGCUAAACUGAGAUUGUCCAAUCGCAGUGAUGAAUUCGCCGCAAA
........((((....))))(((((((.........)))))))(((((((....((((....))))....))...((((.((((....)))).)))).........)))))... ( -38.20)
>DroEre_CAF1 445 114 + 1
GACCUCCAGUGAGAUUUCCCGGGGAAUGCCCGCCUGAAACCAGGCGGCUCCCUUAAGCUCCUGCUGCUCUGACAGGCUGAGGUUAUCCAGGCGCAGCGAGCCAUGGGUGGGAAA
...(((....))).(((((((((((..(((.(((((....)))))))))))))...((((((((.((.(((...(((....)))...))))))))).)))).......)))))) ( -46.80)
>DroMoj_CAF1 599 114 + 1
CACUUCCAGUGAGAUCUCCCUGGGUAUGCCCGCCUGAUACCAGGCGGCACCCUUCAGCUCCUGCUGUUCGGCCAGGCUGAGGUUGUCCAGGCGCAAGGGGGAACUCGCUGCAAA
......(((((((.(((((((..((..(((.(((((....)))))((((.(((.(((((...(((....)))..)))))))).))))..))))).))))))).))))))).... ( -54.70)
>DroAna_CAF1 28453 114 + 1
GACCUCCAGGGAUAUCUCCCGUGGAAUCCCAGCCUGAAACCAGGCUGCACCCUUCAGUUCCUGUUGCUCUGCCAGACUGAGAUUAUCCAGUCGCAGGGCAGUGUGUCCGGGGAA
....((((((((....)))).)))).((((((((((....))))))((((....(((...))).((((((((..(((((.(.....)))))))))))))))))).....)))). ( -48.30)
>consensus
CACCUCCAGUGAGAUCUCCCGGGGAAUGCCCGCCUGAAACCAGGCGGCACCCUUCAGCUCCUGCUGCUCGGCCAGGCUGAGAUUAUCCAGGCGCAGGGAAGAAUGCGCGGCAAA
........(((.....((((.((((....(((((((....))))))).))))....((.((((...(((.(.....).)))......)))).)).))))......)))...... (-22.00 = -22.48 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:00 2006