Locus 2147

Sequence ID 3L_DroMel_CAF1
Location 5,845,601 – 5,845,718
Length 117
Max. P 0.662557
window3342

overview

Window 2

Location 5,845,601 – 5,845,718
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.00
Mean single sequence MFE -35.08
Consensus MFE -25.84
Energy contribution -26.52
Covariance contribution 0.68
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.74
SVM decision value 0.27
SVM RNA-class probability 0.662557
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5845601 117 + 23771897
AACUUAAAGAUCUGGAGUGGUGGCGAAAAACGCAGUUUAUUCUCACCAGAUUUGUCCAUUGGAGAAAUUAUCUUUCAACAAAUGGAGCGCAAUGCUAUGCUCACUGCCCAGGUACUU---
......(((((((((.(..((((((.....(((.......(((....)))....(((((((..((((.....))))..).)))))))))........))).)))..))))))).)))--- ( -29.52)
>DroSec_CAF1 53271 117 + 1
AGCUUAAAGAUCUGGAGUGGUGGCGAAAAGCGCAGUUUAUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCAACAAAUGGAGCGCAAUCCUAUGCUCACUGCCCAGGUAUUU---
.........((((((.(..((((((....((((.......(((....)))....(((((..(((((.....))))).....))))))))).......))).)))..)))))))....--- ( -33.50)
>DroSim_CAF1 36335 117 + 1
AACUUAAAAAUCUGGAGUGGUGGCGAAAAGCGCAGUUUAUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCAACAAAUGGAGCGCAAUCCUAUGCUCACUGCCCAGGUAUUU---
.........((((((.(..((((((....((((.......(((....)))....(((((..(((((.....))))).....))))))))).......))).)))..)))))))....--- ( -33.40)
>DroEre_CAF1 54526 117 + 1
AACCUAAAGAUAUGGAGUAGUGGCGAGAUGCGGAGUUUAUUCUCCGCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCCACAAAUGGAGCGCAAUCCCGAGCUCACCGCCCAGGUAUUU---
.((((........((.(..(((((..(.(((((((......)))))))(((((((((((.((((((.....))))))....))))).)).)))).)..)).)))..)))))))....--- ( -38.50)
>DroYak_CAF1 58246 120 + 1
AAGUUGAAGAUCUGGAGUGGUGGCGAGAAGCGGAGUUUGUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUACCUUUCAGCAAAUGGAGCGUAAUCCCAAGCUCACCGCACAGGUAUUUCAA
...(((((((((((..(((((.((.....)).(((((((.(((((...(((......))))))))((((((.(((((.....))))).)))))).)))))))))))).))))).)))))) ( -40.50)
>consensus
AACUUAAAGAUCUGGAGUGGUGGCGAAAAGCGCAGUUUAUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCAACAAAUGGAGCGCAAUCCUAUGCUCACUGCCCAGGUAUUU___
.........((((((.(((((((((((((((...)))).)))......(((((((((((..(((((.....))))).....))))).)).))))....)).))))))))))))....... (-25.84 = -26.52 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:31 2006