| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,826,655 – 5,826,745 |
| Length | 90 |
| Max. P | 0.687967 |
| Location | 5,826,655 – 5,826,745 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 71.83 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -16.27 |
| Energy contribution | -16.47 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5826655 90 - 23771897 GCAAACAAGACCAGGCCAUGAAUGUGCUUUGCUUCCCAGGCGCUCAUGGACGCCUUUUUGGCCUCCGCUGCCGCUAAA--------AUCCCCC--------ACC-C--C .............(((.((((..((((((........))))))))))(((.(((.....))).)))...)))......--------.......--------...-.--. ( -21.50) >DroSec_CAF1 34373 92 - 1 GCAAACAAGACCAGGCCAUGAAUGUGCUUUGCUUCCCAGGCGCUCAUGGACGCCUUUUUGGCCCCCGCUGCCGCUGAAA-------ACCCCCC--------ACCCC--C .......((..(((.((((((..((((((........))))))))))))..(((.....))).....)))...))....-------.......--------.....--. ( -20.20) >DroEre_CAF1 35071 90 - 1 NNNNNNCAGACCAGGCCAUGAAUGUGCUUUGCUUCCCAGGCGCUCAUGGACGCCUUUUUGGCCCCCGCUGCCGUUAC---------CCCCCCC--------ACUCC--C ......(((....((((((((..((((((........))))))))))))..(((.....)))..)).))).......---------.......--------.....--. ( -20.60) >DroYak_CAF1 37601 85 - 1 GCAAACAAGACCAGGCCAUGAAUGUGCUUUGCUUCCCAGGCGCUCAUGGACGCCUUUUUGGCCCCCUCCC------C---------CCCACCA--------ACUCCA-C .............((((((((..((((((........))))))))))))..(((.....)))........------.---------....)).--------......-. ( -19.20) >DroAna_CAF1 37144 91 - 1 -------GGACCAGGCCGUGAAUGUGCUUUGCUUCCCAGGCGCUCAUGGACGCCUUUUUGGCCCUCCCCUCCCCUCCUUACCCUACCUCCCCA--------ACC-C--A -------(((..(((((((((..((((((........))))))))))))..(((.....)))...................)))...)))...--------...-.--. ( -21.60) >DroPer_CAF1 38189 88 - 1 ---------GCCAGGGCAUGAAUGUGCUUUGCUUCCCAGGCGCUCAUGGAUGCCUCU--GCCCCCCAGCU--CCUUGC--------CUCCCCGUCCUCCUCACUCCACC ---------...(((((((((..((((((........))))))))))(((.((....--((......)).--....))--------.)))..)))))............ ( -19.60) >consensus ______AAGACCAGGCCAUGAAUGUGCUUUGCUUCCCAGGCGCUCAUGGACGCCUUUUUGGCCCCCGCCGCCGCUAC_________CCCCCCC________ACCCC__C .............((((((((..((((((........))))))))))))..(((.....)))............................))................. (-16.27 = -16.47 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:14 2006