Locus 213

Sequence ID 3L_DroMel_CAF1
Location 597,060 – 597,155
Length 95
Max. P 0.713999
window313

overview

Window 3

Location 597,060 – 597,155
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.75
Mean single sequence MFE -26.48
Consensus MFE -13.54
Energy contribution -13.79
Covariance contribution 0.25
Combinations/Pair 1.11
Mean z-score -2.45
Structure conservation index 0.51
SVM decision value 0.38
SVM RNA-class probability 0.713999
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 597060 95 - 23771897
CCAAUCACUUCAAAUUUGUAUUCAUUCUGAAAUCUGU-----GGC------------------ACAGGAAGUGAUUGUCAGCGAAA-AUG-AUUACACGCUGGCCAAAUGACAAGUGCCC
..(((((((((.........(((.....)))..(((.-----...------------------.))))))))))))(((((((...-...-......)))))))................ ( -22.90)
>DroPse_CAF1 15432 113 - 1
CUAAUCACUUCACAUUUGUAUUCAUUCUGUAAUCUGU-----GGCACAGCACCAGCCACAAGCACAGGAAGUUAUUGUCAGCGAAA-AUG-AUUACAUGCUGACAAAACCAGAAGUGUCC
.....((((((.............((((((....(((-----(((.........))))))...)))))).(((.((((((((....-(((-....))))))))))))))..))))))... ( -32.60)
>DroEre_CAF1 10228 94 - 1
CUAAUCACUUCACAUUUGUAUUCAUUCUGAAAUCUGU-----GGC------------------ACAGGAAGUUAUUGUCAGCGA-A-AUG-AUUACACGCUGGCCAAAUCACAAGUGGCC
............(((((((.(((.....))).....(-----(((------------------((((.......))))(((((.-.-...-......)))))))))....)))))))... ( -19.20)
>DroYak_CAF1 10564 95 - 1
CUAA----UUCACAUUUGUAUUCAUUCUGAAAUCUGUGGUGUGGC------------------ACAGGAAGUUAUUGUCAGCGA-A-AUG-AUUACACGCUGGCCAAAUCACAAGUGUCC
....----...((((((((.............((((((......)------------------)))))........(((((((.-.-...-......)))))))......)))))))).. ( -23.20)
>DroAna_CAF1 14723 95 - 1
CUAAUCACUUCACAUUUGUAUUCCGUGUGUUAUCUGU-----GGC------------------ACAGGAAGUUAUUGUCAGCAAAA-AUG-AUUACACGCUGACAAAAUCACAAGUGUCC
...........((((((((.((((.(((((((....)-----)))------------------)))))))....((((((((....-...-.......))))))))....)))))))).. ( -28.64)
>DroPer_CAF1 16019 115 - 1
CUAAUCACUUCACAUUUGUAUUCAUUCUGUAAUCUGU-----GGCACAGCACCAGCCACAAGCACAGGAAGUUAUUGUCAGCGAAAAAUGAAUUACAUGCUGACAAAACCAGAAGUGUCC
.....((((((.............((((((....(((-----(((.........))))))...)))))).(((.(((((((((..............))))))))))))..))))))... ( -32.34)
>consensus
CUAAUCACUUCACAUUUGUAUUCAUUCUGAAAUCUGU_____GGC__________________ACAGGAAGUUAUUGUCAGCGAAA_AUG_AUUACACGCUGACAAAAUCACAAGUGUCC
............(((((((.............(((((..........................)))))........(((((((..............)))))))......)))))))... (-13.54 = -13.79 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:28 2006