Locus 2122

Sequence ID 3L_DroMel_CAF1
Location 5,809,281 – 5,809,371
Length 90
Max. P 0.786438
window3302

overview

Window 2

Location 5,809,281 – 5,809,371
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 80.23
Mean single sequence MFE -27.17
Consensus MFE -18.14
Energy contribution -17.83
Covariance contribution -0.31
Combinations/Pair 1.17
Mean z-score -1.76
Structure conservation index 0.67
SVM decision value 0.57
SVM RNA-class probability 0.786438
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5809281 90 + 23771897
UAAAUAGCUUUUGGGGCACAAGGUGAAGCCG-AGAGGCUGGAAUUGGUGGCCAACCGGUGGCAGUGGCGACUCGAGAGUCGAGAUCCGAGA
........(((((((.(((..(((..((((.-...))))...))).((.(((....))).)).))).)..((((.....))))..)))))) ( -29.30)
>DroPse_CAF1 18663 71 + 1
UAAAUAGCUUUUGGGGCACAAGGUGAAGCUG---AGGCUGAAGUUGGUGGCCAACCAGUGGCAGUGGCCACUA-----------------C
....(((((((.....(((...))).....)---))))))....(((((((((.((...))...)))))))))-----------------. ( -23.30)
>DroSec_CAF1 17220 90 + 1
UAAAUAGCUUUUGGUGCACAAGGUGAAGCCG-AGAGGCUGGAAUUGGUGGCCAACCGGUGGCAGUGGCGACUCGAGAGUCGAGAUCCCAGA
......(((.(((((((.(((.....((((.-...))))....)))...))..))))).)))..(((.((((((.....)))).))))).. ( -30.60)
>DroEre_CAF1 17412 83 + 1
UAAAUAGCUUUUGGGGCACAAGGUGAAGCCG-AGAGGCUGGAAUUGGUGGCCAACCGGUGGCAGUGGCGACUCGAGACUCGA-------GA
......(((.(((((((.(((.....((((.-...))))....)))...)))..)))).)))........((((.....)))-------). ( -27.60)
>DroAna_CAF1 17466 75 + 1
UAAAUAGCUUUUGGGGCACAAGGUGAAGCUGUUGCCGCUGGAGUUGGUGGCCAACCAGUGGCAGUGGCCAUUCGA----------------
......(((.....)))......((((((..((((((((((..((((...))))))))))))))..))..)))).---------------- ( -28.90)
>DroPer_CAF1 18729 71 + 1
UAAAUAGCUUUUGGGGCACAAGGUGAAGCUG---AGGCUGAAGUUGGUGGCCAACCAGUGGCAGUGGCCACUA-----------------C
....(((((((.....(((...))).....)---))))))....(((((((((.((...))...)))))))))-----------------. ( -23.30)
>consensus
UAAAUAGCUUUUGGGGCACAAGGUGAAGCCG_AGAGGCUGGAAUUGGUGGCCAACCAGUGGCAGUGGCCACUCGA_______________A
......(((.(((((((.(((..(..((((.....)))).)..)))...)))..)))).)))............................. (-18.14 = -17.83 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:54 2006