| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,796,174 – 5,796,267 |
| Length | 93 |
| Max. P | 0.545468 |
| Location | 5,796,174 – 5,796,267 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Mean single sequence MFE | -16.88 |
| Consensus MFE | -9.42 |
| Energy contribution | -10.08 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5796174 93 - 23771897 AAGACCUAUUCAGAU------UCAGAUUUCCCCAUUCCCAUUACCAUCCAUCUGCCUUUGCCGAGCUCACAGGUCGCGAAAAUCUUUUUCGCACUGCCU ..(((((...((((.------.(((((......................)))))..))))..(....)..)))))((((((.....))))))....... ( -16.35) >DroSec_CAF1 4306 95 - 1 ---ACCUAUUCAGAUUCAGAUUCAGAUUCCCCCAUUCCCAUUACCAUCCAUCUGCCUUUGCCGAGCUCACAGCUCGCGAAAAUCUU-UUCGCACUGCCU ---.......(((...((((..(((((......................)))))..))))..((((.....))))((((((....)-))))).)))... ( -17.35) >DroEre_CAF1 4090 86 - 1 ---ACCUAUUCAGAA------UCAGAUU--CAGAUACCCAUUCCCAUCCAUCUGUCUUU-GCGAGCUCACAACUCGCGAAAAUCUA-UUCGCACUGCCU ---.........(((------(.(((((--(((((..............)))))..(((-(((((.......))))))))))))))-)))......... ( -16.94) >consensus ___ACCUAUUCAGAU______UCAGAUU_CCCCAUUCCCAUUACCAUCCAUCUGCCUUUGCCGAGCUCACAGCUCGCGAAAAUCUU_UUCGCACUGCCU ..........(((.........(((((......................)))))........((((.....))))(((((.......))))).)))... ( -9.42 = -10.08 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:44 2006