| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,761,817 – 5,761,919 |
| Length | 102 |
| Max. P | 0.986905 |
| Location | 5,761,817 – 5,761,919 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.07 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -18.61 |
| Energy contribution | -20.50 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.986905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5761817 102 - 23771897 ------------CUCUUAAUCCACAUAGCCAAAUGCUAAUGAAAUGGAGUUUUUCACUUAACCACCAAGGUUGCGAAGGGAAAUCUUUCUCAAGCGGCCUUCUCUCUGCUAUCA- ------------.......((((((((((.....))).)))...))))..................((((((((...(((((....)))))..)))))))).............- ( -20.50) >DroSec_CAF1 4360 105 - 1 ACAAUUGAUGGUCCACCUAUCCACAUAGCCAAAUGCUAAUGAAAC---------CAC-CAACCACCAAGGUUGCGAAGGGGAAUCUAUCUCAAGCGACCUUCUCUCCGCCAUCAA ....((((((((...........((((((.....))).)))....---------...-........((((((((....((((.....))))..))))))))......)))))))) ( -26.90) >DroSim_CAF1 4155 114 - 1 ACAAAUGAUGGUCCACCCAUCCACAUAGCCAAAUGCUAAUGAAAUGGAGUUUUUCACUUAACCACCAAGGUUGCGAAGGGAAAUCUAUCUCAAGCGGCCUUCUCUCCGCCAUCA- .....(((((((..((((((...((((((.....))).)))..)))).))................((((((((...((((......))))..))))))))......)))))))- ( -28.80) >consensus ACAA_UGAUGGUCCACCAAUCCACAUAGCCAAAUGCUAAUGAAAUGGAGUUUUUCACUUAACCACCAAGGUUGCGAAGGGAAAUCUAUCUCAAGCGGCCUUCUCUCCGCCAUCA_ .....(((((((...........((((((.....))).))).........................((((((((...((((......))))..))))))))......))))))). (-18.61 = -20.50 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:19 2006