Locus 2089

Sequence ID 3L_DroMel_CAF1
Location 5,748,627 – 5,748,724
Length 97
Max. P 0.656875
window3254

overview

Window 4

Location 5,748,627 – 5,748,724
Length 97
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.75
Mean single sequence MFE -27.90
Consensus MFE -15.35
Energy contribution -16.30
Covariance contribution 0.95
Combinations/Pair 1.24
Mean z-score -2.15
Structure conservation index 0.55
SVM decision value 0.26
SVM RNA-class probability 0.656875
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5748627 97 + 23771897
AAAUACAAAUAAUACGAUUACCCCGAAUAGUCUGUGAUGGCUGCGUUGCUGGUAUCCGUUCCCAACCGGGCGGUCA---CCACAACGC--GUCCUCCGUUCA
........................((((((((......))))((((((.((((..((((((......))))))..)---)))))))))--.......)))). ( -29.00)
>DroSec_CAF1 7524 97 + 1
AAAUACAAACAAUACGAUUACCCGGAAUAGUCUGUGAUGACUGCGUUGCUGGUAUCCGUUCCCAACCGGUCGGGCA---CCACAACGC--GUCCUCCGUUCA
......................((((..((((......))))((((((.((((..(((..((.....)).)))..)---)))))))))--....)))).... ( -30.90)
>DroSim_CAF1 7500 97 + 1
AAAUACAAACAAUACGAUUACCCCGAAUAGUCUGUGAUGACUGCGUUGCUGGUAUCCGUUCCCAACCGGGCGGGCA---CCACAACGC--GUCCUCUGUUCA
........................((((((........(((.((((((.((((..((((((......))))))..)---)))))))))--)))..)))))). ( -31.50)
>DroEre_CAF1 7513 93 + 1
-AAUACAAACGAUACGAUUACCCCGAAUAGUCUGUGAU---UGCGUUGAUGGUAUCCGUUCUCAACCGGGCGGACA---CCACAACGC--GUCCUCCGUUCA
-......((((.((((((((.......))))).)))..---.((((((.((((.(((((((......))))))).)---)))))))))--......)))).. ( -30.10)
>DroYak_CAF1 7535 93 + 1
-AAUACAAACGAUACGAUUACCCCGAAUAGUCUGUGAU---UGCGUUGAUGGUAUCCGUACCCAACCGGGUGGACA---CCACAACGC--GUCCUCCGUUCA
-......((((.((((((((.......))))).)))..---.((((((.((((.(((..((((....))))))).)---)))))))))--......)))).. ( -28.60)
>DroPer_CAF1 7804 86 + 1
GAAUACGA---AUACGAAU-------AUAGUCUGUGAU---UGCUUUGAAGUUAUCCAUC--CAUC-CGUUGGACAGAUCUUCAAUGCUCGGCCCCCCGAAA
........---........-------............---.((.((((((..(((..((--((..-...))))..))))))))).))((((....)))).. ( -17.30)
>consensus
AAAUACAAACAAUACGAUUACCCCGAAUAGUCUGUGAU___UGCGUUGAUGGUAUCCGUUCCCAACCGGGCGGACA___CCACAACGC__GUCCUCCGUUCA
........................((((.(...(.(((....((((((.(((..(((((((......))))))).....)))))))))..)))).).)))). (-15.35 = -16.30 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:07 2006