Locus 2087

Sequence ID 3L_DroMel_CAF1
Location 5,740,489 – 5,740,609
Length 120
Max. P 0.705192
window3252

overview

Window 2

Location 5,740,489 – 5,740,609
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.39
Mean single sequence MFE -34.81
Consensus MFE -21.79
Energy contribution -19.85
Covariance contribution -1.94
Combinations/Pair 1.47
Mean z-score -2.32
Structure conservation index 0.63
SVM decision value 0.36
SVM RNA-class probability 0.705192
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5740489 120 + 23771897
UUGCGAUGAGCAGCUCAUCCUGUCCAUCACCUUUAAUCAGGCUGUGAAGAUCCACUCUUUGAAGUUCAAGGCACCUUCGCACCUGGGUCCCAAGGAUGUGAAGCUGUUCAUUAACCAGCC
....(((((((((((((((((.......(((......((((.(((((((.......(((((.....)))))...))))))))))))))....))))))...)))))))))))........ ( -39.20)
>DroPse_CAF1 21266 120 + 1
CUGCGAUGAGCAGCUGAUCUUAUCCAUCACUUUCAACCAGGCAGUAAAGAUCCAUUCGUUAAAGUUCAAAGCCCCGUCGCAGCUGGGUCCCAAGGAUGUAAAGCUGUUCAUCAACCAGCC
....(((((((((((.....(((((...(((.((.....)).)))...((((((((((.....((.....)).....)).)).))))))....)))))...)))))))))))........ ( -32.10)
>DroEre_CAF1 10266 120 + 1
CUGCGAUGAGCAGCUGAUCCUGUCCAUCACCUUUAAUCAGGCUGUGAAGAUUCACUCCCUGAAGUUCAAGGCGCCUUCGCAACUAGGUCCCAAGGAUGUCAAGCUGUUCAUCAACCAGCC
....((((((((((((((...((((...........(((((..((((....))))..))))).......((.((((........)))).))..))))))).)))))))))))........ ( -43.90)
>DroWil_CAF1 11900 120 + 1
UUGUGAUGAGCAAUUGAUCAUGUCCAUUACAUUCAAUCAGGCGGUUAAAAUACAUUCUCUGAAAUUCAAGGCACCCGUCCAAUUGGGACCUAAAGAUGUGAAAUUGUUUAUUAAUCAACC
...((((((((((((..(((((((............(((((..((........))..)))))......(((..((((......)))).)))...)))))))))))))))))))....... ( -27.70)
>DroAna_CAF1 9871 120 + 1
UUGUGAUGAACAGCUCAUCCUGUCCAUCACCUUCAACCAGGCUGUGAAGAUCCACUCGCUUAAGUUUAAGGCACCGUCACAACUUGGUCCCAAGGAUGUCAAGCUUUUCAUCAACCAGCC
...(((((((.((((((((((..............((((((.(((((.((.....))((((.......))))....))))).))))))....))))))...)))).)))))))....... ( -33.87)
>DroPer_CAF1 18416 120 + 1
CUGCGAUGAGCAGCUGAUCUUAUCCAUCACUUUCAACCAGGCAGUAAAGAUCCAUUCGUUAAAGUUCAAAGCCCCGUCGCAGCUGGGUCCCAAGGAUGUAAAGCUGUUCAUCAACCAGCC
....(((((((((((.....(((((...(((.((.....)).)))...((((((((((.....((.....)).....)).)).))))))....)))))...)))))))))))........ ( -32.10)
>consensus
CUGCGAUGAGCAGCUGAUCCUGUCCAUCACCUUCAACCAGGCUGUGAAGAUCCACUCGCUGAAGUUCAAGGCACCGUCGCAACUGGGUCCCAAGGAUGUAAAGCUGUUCAUCAACCAGCC
....(((((((((((.....(((((....((((.(((..((..((........))...))...))).))))..(((........)))......)))))...)))))))))))........ (-21.79 = -19.85 +  -1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:05 2006