Locus 207

Sequence ID 3L_DroMel_CAF1
Location 572,298 – 572,388
Length 90
Max. P 0.560584
window305

overview

Window 5

Location 572,298 – 572,388
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.74
Mean single sequence MFE -27.77
Consensus MFE -17.03
Energy contribution -17.03
Covariance contribution 0.00
Combinations/Pair 1.16
Mean z-score -1.31
Structure conservation index 0.61
SVM decision value 0.05
SVM RNA-class probability 0.560584
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 572298 90 + 23771897
GCCG---------CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU------CGAUCU----UGUUUCGGUUCCUGGGCAGA------UAGUUA-----UGCA
...(---------(......))......(((...(((((.(((((....((((((((((((..------.)))).----))))).)))...))))).))------)))...-----))). ( -27.30)
>DroPse_CAF1 3072 120 + 1
GUCAGUCUUUUGACUGUUUUGCAUUCACGCGAAUCUUUUGGCCCAAUUUGCCAAACAGAUUUUUGUCUUCGAUUUGGGGUGUCUCUGUUUCCUGGCGAAAAAUUAUAGUUAUGUUAUGCA
..(((((....)))))...(((((..(((..(.(((((((((.......)))))).)))((((((((...((..(((((...)))))..))..)))))))).......)..))).))))) ( -28.30)
>DroSec_CAF1 3722 90 + 1
GCCG---------CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGCUUUU------CGAUCU----UGUUUCGGUUCCUGGGCAGA------UAGUUA-----UGCA
...(---------(......))......(((...(((((.(((((....(((((((((.....------.....)----))))).)))...))))).))------)))...-----))). ( -24.70)
>DroSim_CAF1 4148 90 + 1
GCCG---------CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU------CGAUCU----UGUUUCGGUUCCUGGGCAGA------UAGUUA-----UGCA
...(---------(......))......(((...(((((.(((((....((((((((((((..------.)))).----))))).)))...))))).))------)))...-----))). ( -27.30)
>DroEre_CAF1 3748 90 + 1
GCCG---------CUCACUCGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU------CGAUUU----GGUUGCGGUUCCUGGGCAGA------AAGCUA-----UGCA
...(---------((((.(((((..((((.((((((((((((.......))).))))))))).------))...)----)..)))))....)))))...------......-----.... ( -30.50)
>DroPer_CAF1 3087 120 + 1
GCCAGUCUUUUGACUGUUUUGCAUUCACGCGAAUCUUUUGGCCCAAUUUGCCAAACAGAUUUUUGUCUUCGAUUUGGGGUGUCUCUGUUUCCUGGCGAAAAAUUAUAGUUAUGUUAUGCA
..(((((....)))))...(((((..(((..(.(((((((((.......)))))).)))((((((((...((..(((((...)))))..))..)))))))).......)..))).))))) ( -28.50)
>consensus
GCCG_________CUCAUUUGCAGUCACGCGAAUCUGUUGGCCCAAUUUGCCAAGCAGAUUUU______CGAUCU____UGUUUCGGUUCCUGGGCAGA______UAGUUA_____UGCA
(((.................((......))((((((((((((.......))).)))))))))...............................)))...........((........)). (-17.03 = -17.03 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:05 2006