Locus 2046

Sequence ID 3L_DroMel_CAF1
Location 5,634,035 – 5,634,125
Length 90
Max. P 0.527425
window3193

overview

Window 3

Location 5,634,035 – 5,634,125
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 76.91
Mean single sequence MFE -20.38
Consensus MFE -12.80
Energy contribution -12.75
Covariance contribution -0.05
Combinations/Pair 1.44
Mean z-score -1.26
Structure conservation index 0.63
SVM decision value -0.01
SVM RNA-class probability 0.527425
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5634035 90 - 23771897
UAACAAAGUGAUUCCGUGGACACAUAUUGAUCGGGUGCCUUGGCUCAAAAAUGGCAUUAUAAAAGGUAAUGUCUUAUUU------AUAUU---AUUAAG
........(((..(((.((.(((...........))))).))).))).....((((((((.....))))))))......------.....---...... ( -14.60)
>DroSec_CAF1 7051 93 - 1
UAACAAAGUGAUGCCGUGGACACAUAUUGAUCGGGUGUCCUGGCUCAAAAAUGGCAUUAUAAAAGGUAAGUUAUUAUUU------AUAUUCAAGUUAAG
((((....(((.((((.((((((...........)))))))))))))..((((((.((((.....))))))))))....------........)))).. ( -22.10)
>DroSim_CAF1 7450 93 - 1
UAACAAAGUGAUGCCGUGGACACAUAUUGAUCGGGUGUCCUGGCUCAAAAAUGGCAUUAUAAAAGGUAAGUUAUUAUUU------AUAUUCAAUUUAAG
........(((.((((.((((((...........)))))))))))))..((((((.((((.....))))))))))....------.............. ( -20.10)
>DroEre_CAF1 7221 95 - 1
UAACAAGGUGAUGCCGUGGACACAUAUUGAUCGGGUUUCCUGGCUUAAAAAUGGCAUUAUAAAAGGUAAGUCCAUAU----UUUGAUAUUAUACAUAAC
...(((((((((((((((....))).(((((((((...))))).))))....))))))))....((.....))....----)))).............. ( -18.30)
>DroWil_CAF1 5878 95 - 1
UAGAAAAGUGAUGCCUUGGUCGGAAAUUGAUACCGUAACUUGGGUGAAAAAGGGUUUGGUGCAAGGUAAGUUUUGCU----CAGGACAUGACUUUUAAC
...((((((.((((((.((.(((((.(((.(((((.(((((...(....).)))))))))))))......)))))))----.))).))).))))))... ( -24.60)
>DroYak_CAF1 6919 99 - 1
UAAGAAAGUGAUGCCAUGGACACAUAUUGAUCGCGUGUCCUGGCUUAAAAAUGGCAUUAUAAAAGGUAAGUCCUUAUUUAUUUGGAUAUUAUACAUAAA
.......((((((((((((((((...........))))))..........)))))))))).....((((((((..........)))).))))....... ( -22.60)
>consensus
UAACAAAGUGAUGCCGUGGACACAUAUUGAUCGGGUGUCCUGGCUCAAAAAUGGCAUUAUAAAAGGUAAGUUCUUAUUU______AUAUUAAACUUAAG
.......((((((((((((((((...........))))))..........))))))))))....................................... (-12.80 = -12.75 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:09 2006