| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,630,714 – 5,630,812 |
| Length | 98 |
| Max. P | 0.636962 |
| Location | 5,630,714 – 5,630,812 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 80.03 |
| Mean single sequence MFE | -15.19 |
| Consensus MFE | -13.08 |
| Energy contribution | -12.80 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5630714 98 + 23771897 -------A-AUCGUUUAACUAAUUU---UCCCCAUUUUCACCACCUAC--CCACCAA--CCAC-CCAACAGAAAUCGCCGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-................---(((....((((.........--.......--....-......)))).....))).((((((((((........))..)))))))). ( -14.77) >DroSec_CAF1 3742 98 + 1 -------A-AUCCUUUAACUAAUUU---UCCCCAUUUUCACCACCUAC--CCACCAA--CCAC-CCAACAGAAAUCGCCGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-................---(((....((((.........--.......--....-......)))).....))).((((((((((........))..)))))))). ( -14.77) >DroSim_CAF1 4153 97 + 1 -------A-AUCCUUUAACUAAUU----UCCCCAUUUUCACCACCUAC--CCACCAA--CCAC-CCAACAGAAAUCGCCGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-...............----(((....((((.........--.......--....-......)))).....))).((((((((((........))..)))))))). ( -14.77) >DroEre_CAF1 3907 100 + 1 -------C-AUCCUCCUACCAAUUU---CC-CCAUUUUCACCACCUAU--CCACCAACUACAAUCCAACAGAAAUCGAAGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA -------.-....((((.(..((((---(.-.................--....................))))).).)))).((((((((((........))..)))))))). ( -15.76) >DroYak_CAF1 3478 94 + 1 -------AAAUCCUUUGACUAAUUU---UCACCA-----CCCACCUAU--CCACGAA--ACAA-CCAACAGAAAUCGCAGGACUCGUCGCAUGCGCUGCUAUAACUGCGGCGAA -------...((((.(((.....((---((....-----.........--.......--....-......))))))).)))).((((((((..............)))))))). ( -13.75) >DroAna_CAF1 444 105 + 1 CACUGAUA-AACCCUCCACUGAUUACUCUCCC-----UCCCUGAUUACCCCCCUCAA--AAAC-CCAAUAGCAAUCGCAGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA ........-.....(((..((((((.......-----....))))))..........--....-......((....)).))).((((((((((........))..)))))))). ( -17.30) >consensus _______A_AUCCUUUAACUAAUUU___UCCCCAUUUUCACCACCUAC__CCACCAA__ACAC_CCAACAGAAAUCGCAGGACUCGCCGCAUGCGCUGCUACAACUGCGGCGAA ...................................................................................((((((((((........))..)))))))). (-13.08 = -12.80 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:08 2006