Locus 2041

Sequence ID 3L_DroMel_CAF1
Location 5,616,919 – 5,617,010
Length 91
Max. P 0.984164
window3187

overview

Window 7

Location 5,616,919 – 5,617,010
Length 91
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 88.56
Mean single sequence MFE -16.73
Consensus MFE -13.82
Energy contribution -14.33
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.78
Structure conservation index 0.83
SVM decision value 1.97
SVM RNA-class probability 0.984164
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5616919 91 - 23771897
AGAAAGUCGCAUACACAUACAC----ACACAACAACCGGCAUUGCACCAAUACCCAUUGCACUGCCAUACGAACGCAUCCCGUUAAAGAUUCUCA
.((.((((..............----...........((((.((((...........)))).)))).....((((.....))))...)))).)). ( -15.80)
>DroSec_CAF1 881 95 - 1
AGAAAGUCGCAUACACACACACACACACACAACAACCGGCAUUGCACCAAUACCCACUGCACUGCCAUACGAACGCAUCCCGUUAAAGAUUCUCA
.((.((((.............................((((.((((...........)))).)))).....((((.....))))...)))).)). ( -15.80)
>DroSim_CAF1 883 95 - 1
AGAAAGUCGCAUACACACACACACUCACACAACAACCGGCAUUGCACCAAUACUCACUGCACUGCCAUACAAACGCAUCCCGUUAAAGAUUCUCA
.((.((((.............................((((.((((...........)))).)))).....((((.....))))...)))).)). ( -15.70)
>DroEre_CAF1 899 89 - 1
AGAAAGGCGCACGCACAC------ACACACAGCAACCGGCAUUGCACCAAUGCCCAUUGCACUGCCACACGAACGCAUCCCGUCCAAGAUUCUCA
((((.((((....)....------.......((((..(((((((...)))))))..))))...)))....(.(((.....))).)....)))).. ( -19.60)
>consensus
AGAAAGUCGCAUACACACACAC__ACACACAACAACCGGCAUUGCACCAAUACCCACUGCACUGCCAUACGAACGCAUCCCGUUAAAGAUUCUCA
.((.((((.............................((((.((((...........)))).)))).....((((.....))))...)))).)). (-13.82 = -14.33 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:03 2006