| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,613,504 – 5,613,600 |
| Length | 96 |
| Max. P | 0.556422 |
| Location | 5,613,504 – 5,613,600 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.48 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -22.30 |
| Energy contribution | -22.97 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.556422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5613504 96 + 23771897 CUUUCCUCACUCUCGUUUGUGGGGUGGAGAUUGCAUUCAUU-GUGCACAUGCGCAUUUCGAAGUAAUAGCAAAAGCAACAAAAACAAAAGAAUGCAC ((((((((((........)))))).))))..(((((((..(-((((....))))).............((....)).............))))))). ( -26.90) >DroSim_CAF1 31928 96 + 1 CUUUCCUCACUCUCGUUUGUGGGGUGGAGAUUGCAUUCGUU-GUGCACAUGCGCAUUUCAAAGUAAUGGCAACAGCAACAAAAACAAAAGAAUGCAC ((((((((((........)))))).))))..(((((((..(-((((....))))).......((..((....))...))..........))))))). ( -28.60) >DroEre_CAF1 34030 97 + 1 CUUUCCUCACUCUCGUUUGUGGGAUGGAGAUUGCAUUCGUUUUUGCACAUGCGCAUUUCGAAGUAAUAGCAACAGCAACAGAAACAAAAGAAUGCAC ((.(((.(((........)))))).))....((((((((((((((....(((..........)))...((....))..)))))))....))))))). ( -21.30) >consensus CUUUCCUCACUCUCGUUUGUGGGGUGGAGAUUGCAUUCGUU_GUGCACAUGCGCAUUUCGAAGUAAUAGCAACAGCAACAAAAACAAAAGAAUGCAC ((((((((((........)))))).))))..(((((((....((((....))))..............((....)).............))))))). (-22.30 = -22.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:01 2006