| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,546,777 – 5,546,878 |
| Length | 101 |
| Max. P | 0.714204 |
| Location | 5,546,777 – 5,546,878 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.23 |
| Mean single sequence MFE | -14.92 |
| Consensus MFE | -9.36 |
| Energy contribution | -8.95 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5546777 101 - 23771897 AUUCAAUCAAAAGUGAUUGAAUAAGCACCUAGCUCCAAAGCAAUUUCGCAUAUUCACAUGUACAUAACAGCAAAAAAAAACAAAAAAAUGUUCAAUUGUAU (((((((((....)))))))))..((.....(((....)))......((((......))))........)).............................. ( -13.60) >DroSec_CAF1 10786 97 - 1 AUUCAAUCAAAAGUGAUUGAAUAAGCACCUAGCUACAAAGCAAUUUCGCAUAUUCACAUGUACAUAACAGCAAAAAAC----AAAAAAUGUUCAAUUGUAU (((((((((....))))))))).(((.....))).....((((((..((((......))))..............(((----(.....)))).)))))).. ( -14.00) >DroSim_CAF1 10761 97 - 1 AUUCAAUCAAAAGUGAUUGAAUAAGCACCUAGCUCCAAAGCAAUUUCGCAUAUUCACAUGUACAUAACAGCAAAAAAC----AAAAAAUGUUCAAUUGUAU (((((((((....)))))))))..((.....(((....)))......((((......))))........)).......----................... ( -13.60) >DroEre_CAF1 10994 87 - 1 AUUCAAUCAAAAGUGAUUGAAUAAGCACC----UCUAAAGCAAUUUCGCAUAUUCACAUGUACAUAAUAGCAA--A--------AAAACGUUCAAUUGUGU (((((((((....)))))))))..((...----......))......((((......))))((((((((((..--.--------.....)))..))))))) ( -13.00) >DroYak_CAF1 11064 89 - 1 AUUCAAUCAAAAGUGAUUGGAUAAGCACC----UCUAAAGCAAUUUCGCAUAUUCACAUGUGCAUAAUGGCGAAAA--------AAAAACUUCAAUUGUGU (((((((((....)))))))))..((((.----......((.(((..((((((....))))))..))).))(((..--------......)))....)))) ( -18.60) >DroAna_CAF1 12140 78 - 1 AUUCGAUCGAAAUUGAUUGAAUAAGCGCC----AUUAAAGCCAUUUCGCAUAUUCGCAUGUA----AC-------A--------GAAAUGUUUAAUUGUGA (((((((((....)))))))))...(((.----((((((..((((((((((......)))).----..-------.--------)))))))))))).))). ( -16.70) >consensus AUUCAAUCAAAAGUGAUUGAAUAAGCACC____UCCAAAGCAAUUUCGCAUAUUCACAUGUACAUAACAGCAAAAA________AAAAUGUUCAAUUGUAU (((((((((....))))))))).................((......)).................................................... ( -9.36 = -8.95 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:30 2006