Locus 2011

Sequence ID 3L_DroMel_CAF1
Location 5,521,861 – 5,521,952
Length 91
Max. P 0.896158
window3149

overview

Window 9

Location 5,521,861 – 5,521,952
Length 91
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.64
Mean single sequence MFE -23.06
Consensus MFE -19.96
Energy contribution -20.52
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.87
SVM decision value 0.99
SVM RNA-class probability 0.896158
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5521861 91 + 23771897
GGGGAAUUAUGAAAUUUCUCUUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCCGUUUCAA----CGCCUCAGCUUCCCGGCAAACAUUUCCA
((((((((....))))))))......((((..((((((((((....((((((....)))))).----.((....))))))))))))...)))).. ( -23.70)
>DroSec_CAF1 83523 91 + 1
AGGGAAUUGUAAAAUUUCUCUUUAACGAAACUUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAA----CGCCUCAGCUUCCCGGCAAACAUUUCCA
..((((.(((....((((........))))..((((((((((....((((((....)))))).----.((....))))))))))))))).)))). ( -24.30)
>DroSim_CAF1 85269 91 + 1
AGGGAAUUGUGAAAUUUCUCUUUAACGAAACUUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAA----CGCCUCAGCUUCCCGGCAAACAUUUCCA
..((((.(((....((((........))))..((((((((((....((((((....)))))).----.((....))))))))))))))).)))). ( -24.30)
>DroEre_CAF1 84144 95 + 1
AGGGAAUUGUGAAAUUUCUCCUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCUGCUUAAACACACGCCUCAGCUUUCCGCCAAACAUUUCCA
..((((.(((....((((........))))....(((((((...((((....(....).....))))..)))))))..........))).)))). ( -20.00)
>DroYak_CAF1 72437 95 + 1
AGGGAAUUGUGAAAUUUCUCUUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAACAGACGCCUCAGCUUUCCGGCAAACAUUUCCA
..((((.(((....((((........))))..(((((((..(.(((((((((....))))).))))..((....)))..)))))))))).)))). ( -23.00)
>consensus
AGGGAAUUGUGAAAUUUCUCUUUAACGAAACAUUGUUGGGGAAUUGUGAAAUGCCUGUUUCAA____CGCCUCAGCUUCCCGGCAAACAUUUCCA
..((((.(((....((((........))))..((((((((((....((((((....))))))......((....))))))))))))))).)))). (-19.96 = -20.52 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:26 2006