Locus 2

Sequence ID 3L_DroMel_CAF1
Location 21,622 – 21,722
Length 100
Max. P 0.689393
window2

overview

Window 2

Location 21,622 – 21,722
Length 100
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 92.81
Mean single sequence MFE -21.91
Consensus MFE -20.78
Energy contribution -21.44
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.95
SVM decision value 0.32
SVM RNA-class probability 0.689393
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21622 100 + 23771897
UGUUAUCGCUCUGUUUACACGCAUCCAAAAAAGUAAUG--AACUAUAGUAAACCCAAACAAAAGCCGGGCAAUGCAAUGCGUGUGAUUCAAAAACAGGGAAG
........((((((((((((((((.......(((....--.)))...(((..(((...........)))...))).)))))))))).......))))))... ( -22.41)
>DroSec_CAF1 11789 102 + 1
UGUUAUCGCUCUGUUUACAAGCAUCCCAAAAAGUAAUGUAUACUAGAGUAAACCCAAACAAAUGGCGGGCAAUGCAAUGCGUGUGAUACAAAAACAGGGAAA
........((((((((....(((((((..........((.(((....))).))(((......))).)))..)))).....(((...)))..))))))))... ( -19.10)
>DroSim_CAF1 13317 102 + 1
UGUUAUCGCUCUGUUUACACGCAUCCCAAAAAGUAAUUUAUACUAGAGUAAACCCAAACAAAUGGCGGGCAAUGCAAUGCGUGUGAUACAAAAACAGGGAAA
........(((((((((((((((((((....((((.....)))).........(((......))).))).......)))))))))).......))))))... ( -24.22)
>consensus
UGUUAUCGCUCUGUUUACACGCAUCCCAAAAAGUAAUGUAUACUAGAGUAAACCCAAACAAAUGGCGGGCAAUGCAAUGCGUGUGAUACAAAAACAGGGAAA
........((((((((((((((((.......((((.....))))...(((..(((...........)))...))).)))))))))).......))))))... (-20.78 = -21.44 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:38 2006