Locus 1981

Sequence ID 3L_DroMel_CAF1
Location 5,454,167 – 5,454,287
Length 120
Max. P 0.997169
window3103

overview

Window 3

Location 5,454,167 – 5,454,287
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.17
Mean single sequence MFE -37.00
Consensus MFE -33.20
Energy contribution -33.88
Covariance contribution 0.68
Combinations/Pair 1.11
Mean z-score -2.06
Structure conservation index 0.90
SVM decision value 2.81
SVM RNA-class probability 0.997169
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5454167 120 - 23771897
UAGUUCCAUCCGUAGGUUCUGGCGUUUCAAUCGAGUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACAUUGCUGGGUCUUAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACCG
.((((...((((((((((((((.........(((((.(((((.....))))).)))))((((((((.((........))...)))))))).))))).)))))))))....))))...... ( -38.20)
>DroSec_CAF1 15669 120 - 1
UAGUUCCAUCCGUAGGUUCUGGCGUGUCAAUCGAGUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACACUGCUGAGUCCCAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACCG
.((((...((((((((((((((.........(((((.(((((.....))))).)))))((((((((...(((....)))...)))))))).))))).)))))))))....))))...... ( -39.60)
>DroSim_CAF1 15786 120 - 1
UAGUUCCGUCCGUAGGUUCUGGCGUUUCAAUCGAAUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACACUGCUGAGUCCCAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACUG
.((((...((((((((((((((...............(((((.....)))))......((((((((...(((....)))...)))))))).))))).)))))))))....))))...... ( -35.00)
>DroEre_CAF1 15267 120 - 1
UAGUUCCAUCCGUGGGUUCUGGCGUAUCAAUAGAGUAGUAUAUACAUUCUACUGCUUGGGGAUAAUUACACAGCUGAGUCUUAUUAUCCCACCAGAGACUUGCGGGGCACAGCUUCACCG
..((.((..(((..((((((((..........((((((((.........)))))))).((((((((...((......))...)))))))).))))).)))..))))).)).......... ( -38.30)
>DroYak_CAF1 2500 120 - 1
UAGUUCCAUCCGUAGGUUCUGGCGUUUCAAUGGAGUAGUAUAUACAUUCCACAGCUUGUGGAUAAUUGCACAGCUGGGUCUUAUUAUCCCACCAGAGAUUUGCGGGACACAGCUUCACCG
.((((...((((((((((((((.(......((((((.((....))))))))(((((.(((.(....).)))))))).............).))))).)))))))))....))))...... ( -33.90)
>consensus
UAGUUCCAUCCGUAGGUUCUGGCGUUUCAAUCGAGUAGUAGAUACAUUCUACAGCUUGGGGAUAAUUACACUGCUGAGUCUUAUUAUCCCACCAGAGAUUUGCGGGACACAACUUCACCG
.((((...((((((((((((((.........(((((.(((((.....))))).)))))((((((((...((......))...)))))))).))))).)))))))))....))))...... (-33.20 = -33.88 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:42 2006