| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,431,367 – 5,431,482 |
| Length | 115 |
| Max. P | 0.514717 |
| Location | 5,431,367 – 5,431,482 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.09 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -18.33 |
| Energy contribution | -18.77 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5431367 115 + 23771897 AAAGGGGAUAG-----CUUUUUCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGCGUGGAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ....(((((((-----..((((((((((((..((((....))))........((....))..)))))))))))).)))))))..................(((........)))...... ( -26.10) >DroSec_CAF1 1556 115 + 1 AAUGGGGAUUG-----CUGUUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCCCAAUGUAAAUGU ..((((..(((-----((((((((((....))))))))(..(((((....((((.......)))).((((......))))......)))))..).....)))))..)))).......... ( -32.50) >DroSim_CAF1 1612 115 + 1 AAUGGGGAUUG-----CCGUUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ..((.(..(((-----((((((((((....))))))))(..(((((....((((.......)))).((((......))))......)))))..).....)))))..).)).......... ( -28.30) >DroEre_CAF1 1504 118 + 1 AAAGGGGAUUGAAGGGCUGU-AUUUCUUAUCACAGAACUUACAAAAAUAGUUCUGUAUGAAAGUGAGAUGGAAACCUAUCCCAAUAC-UAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ....(((((...(((..(.(-(((((((((.((((((((.........))))))))))))....)))))).)..)))))))).....-............(((........)))...... ( -26.90) >consensus AAAGGGGAUUG_____CUGUUCCAUCUUAUGAUGGAACUUUCUAAAAUAGUACUGUAUGAAAGUGAGAUGAAAACCUAUCCCAAUAUUUAGGGGUUAAUGGCAAGUCACAAUGCAAAUGU ..................((((((((....))))))))...............(((((....((((..((.......(((((........)))))......))..)))).)))))..... (-18.33 = -18.77 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:06 2006