Locus 1922

Sequence ID 3L_DroMel_CAF1
Location 5,374,710 – 5,374,812
Length 102
Max. P 0.947012
window2997

overview

Window 7

Location 5,374,710 – 5,374,812
Length 102
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -22.98
Consensus MFE -12.80
Energy contribution -13.16
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -2.61
Structure conservation index 0.56
SVM decision value 1.37
SVM RNA-class probability 0.947012
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5374710 102 - 23771897
GCACAAAAUAAUCAGAUUUGG------GUAGAAUGCAAUGUGAAAAGCUUUUAA---UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCAUAGCUGCU--GCUACU
....................(------((((...(((.((((((((..((((((---(((((((((.......)))))))))))))))...))))))))..))).--.))))) ( -30.30)
>DroVir_CAF1 41454 99 - 1
GCACAAAAUAAUCAGAUUUGGCAUUGUGAAAA-------GUGAAAAGCUUUUAACUGUUGCACUUGCGUAAAUUAAAUGCCAUUAAAAUUAUUUUCAUAGC-GCUGC------
((..((((((((......(((((((.((..((-------(((...(((........))).)))))...)).....))))))).....))))))))....))-.....------ ( -19.50)
>DroGri_CAF1 67837 106 - 1
GCACAAAAUAAUCAGAUUUGGCAUUGUGAAAAGUGGAAAGUGAAAAGCUUUUAACUGUUGCAUUUGCGUAAAUUAAAUGCCAUUAAAAUUAUUUUCACAGC-GUUGC------
((..((((((((......(((((((......(((.((((((.....)))))).)))...((....))........))))))).....))))))))....))-.....------ ( -20.80)
>DroSim_CAF1 22108 96 - 1
GCGCAAAAUAAUCAGAUUUGG------GUAGAAUGAAAAGUGAAAAGCUUUUAA---UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCAUAGCUG--------CU
((((.......(((.......------......)))...(((((((..((((((---(((((((((.......)))))))))))))))...))))))).)).)--------). ( -22.62)
>DroAna_CAF1 22777 92 - 1
GCACAAAAUAAUCAGAUUUGG------GUAAAGUGAAAAGUGAAAAGCUUUUAA---UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCACAGA------------
.(((.......((......))------.....)))....(((((((..((((((---(((((((((.......)))))))))))))))...)))))))...------------ ( -21.70)
>consensus
GCACAAAAUAAUCAGAUUUGG______GUAAAAUGAAAAGUGAAAAGCUUUUAA___UGGCAUUUGCGUAAAUUAAAUGCUAUUAAAAUUAUUUUCAUAGC_G_U________
.......................................(((((((..((((((...(((((((((.......)))))))))))))))...)))))))............... (-12.80 = -13.16 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:02 2006