Locus 1921

Sequence ID 3L_DroMel_CAF1
Location 5,373,807 – 5,373,916
Length 109
Max. P 0.960351
window2996

overview

Window 6

Location 5,373,807 – 5,373,916
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 86.29
Mean single sequence MFE -26.90
Consensus MFE -23.74
Energy contribution -24.10
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -2.37
Structure conservation index 0.88
SVM decision value 1.51
SVM RNA-class probability 0.960351
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5373807 109 + 23771897
UCUACCUCCCUCCACAUUUUCACACCACCCCCUCCCUUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCG
......................................(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -26.32)
>DroSec_CAF1 23118 109 + 1
UCUACCUCCCCCGAAAAUUUCACACCACCCCCUCCCUUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCG
......................................(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -26.32)
>DroSim_CAF1 21276 108 + 1
UCUACCUCCCCC-AAAAUUUCACACCACCCCCUCCCAUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCG
............-.........................(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -26.32)
>DroEre_CAF1 21808 104 + 1
UCUACCCC--C-CGAAUUUUCCCAACACCCCCUU--UCGGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCA
........--.-((((.................)--)))((((((((((((.(((..(........)..)))(((((.............))))))))))))).)))). ( -26.85)
>DroYak_CAF1 21715 105 + 1
UCUACCCCC-C-CAAAUUUUCACCCCACCCCCUU--UUUGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCA
.........-.-......................--..(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -25.62)
>DroAna_CAF1 22042 103 + 1
GCCACCACCCCC-GACCUCUG---UCAGCCCCUG--UUGGGGCUCAUGUGCUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACACACCGACCGCACAUGCUGACCA
............-.......(---((((((((..--..))))).(((((((.(((..(........)..)))((((...............))))))))))).)))).. ( -29.96)
>consensus
UCUACCUCCCCCCAAAUUUUCACACCACCCCCUC__UUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCA
.......................................((((((((((((.(((..(........)..)))(((((.............))))))))))))).)))). (-23.74 = -24.10 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:01 2006