Locus 1916

Sequence ID 3L_DroMel_CAF1
Location 5,362,799 – 5,362,904
Length 105
Max. P 0.921755
window2990

overview

Window 0

Location 5,362,799 – 5,362,904
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 82.93
Mean single sequence MFE -39.80
Consensus MFE -26.73
Energy contribution -27.73
Covariance contribution 1.00
Combinations/Pair 1.29
Mean z-score -2.30
Structure conservation index 0.67
SVM decision value 1.14
SVM RNA-class probability 0.921755
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5362799 105 + 23771897
GGGCAGGAAAAUGGUGGGAGCGGGAGCGGGAGGGGGGGGAGUGGGCGGCAUUAAAUGGCCGCCGCGGUCUCGUCACGUAAAUCGCUCGCCUUGGUUUUUCACUGA
.....(((((((.(.((((((((..(((.....((.((((.((((((((........)))))).)).)))).)).)))...)))))).)).).)))))))..... ( -44.60)
>DroSec_CAF1 11991 102 + 1
GGGCAGGAAAACGAGGGGAGCGGGAGCGGGAGG---AGGAGUGGGCGGCAUUAAAUGGCCGCGGCGGUCUCGUCACGUAAAUCCCUCGCCUUGGUUUUUCACUGA
...(((((((.(((((.(((.(((.(((.((.(---(((.((.(.((((........))))).))..)))).)).)))...)))))).)))))...)))).))). ( -42.10)
>DroSim_CAF1 10084 102 + 1
GGGUAGGAAAACGGAGGGAGCGGGAGUGGGAGG---GGGAGUGGGCGGCAUUAAAUGGCCGCGGCGGUCUCGUCACGUAAAUCGCUCGCCUUGGUUUUUCACUGA
.(((.(((((((.((((((((((..((((..((---((..((.(.((((........))))).))..)))).)))).....)))))).)))).)))))))))).. ( -44.70)
>DroAna_CAF1 9697 92 + 1
GGGUGGGAAAAAGGA--AAACAGGU-------G---GGGAGCGGGUGGCAUUAAAUGGUCGCGGCGGUCUCGUCACGUAAAUCGCUCGUCUUGGUCUUUU-UUAA
.......((((((((--...((((.-------.---(.(((((((((((........)))))((((....)))).......)))))).))))).))))))-)).. ( -27.80)
>consensus
GGGCAGGAAAACGGAGGGAGCGGGAGCGGGAGG___GGGAGUGGGCGGCAUUAAAUGGCCGCGGCGGUCUCGUCACGUAAAUCGCUCGCCUUGGUUUUUCACUGA
.....(((((((.((((..((....))...........(((((((((((........)))))((((....)))).......)))))).)))).)))))))..... (-26.73 = -27.73 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:55 2006