Locus 1886

Sequence ID 3L_DroMel_CAF1
Location 5,272,104 – 5,272,197
Length 93
Max. P 0.685799
window2940

overview

Window 0

Location 5,272,104 – 5,272,197
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 74.35
Mean single sequence MFE -25.33
Consensus MFE -12.84
Energy contribution -14.07
Covariance contribution 1.22
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.51
SVM decision value 0.32
SVM RNA-class probability 0.685799
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5272104 93 - 23771897
UUACCAUUUUGCGACAAAUCGCAUUAGGCCCGGACAGUCGA------------GUCGAGUCGACUGUCUCCACU---GUAUGGUAUA------UGCUGCUCUACUCUUAAGCUC
.((((((..(((((....)))))...((...((((((((((------------......))))))))))))...---..))))))..------.(((............))).. ( -28.60)
>DroSec_CAF1 26881 87 - 1
UUACCAU-UUGCGACAAAUCGCAUUAGGCCCGGACAGUCGC-----------------GUCGACUGUCUCCACU---GUAUGGUAUA------UGCUGCUCUCCCCUUAAGCUC
.((((((-.(((((....)))))...((...(((((((((.-----------------..)))))))))))...---..))))))..------.(((............))).. ( -25.70)
>DroSim_CAF1 26551 87 - 1
UUACCAU-UUGCGACAAAUCGCAUUAAGCCCGGACAGUCGA-----------------GUCGACUGUCUCCACU---GUAUGGUAUA------UGCUGCUCUCCCCUUAAGCUC
.((((((-.(((((....)))))........(((((((((.-----------------..))))))))).....---..))))))..------.(((............))).. ( -24.10)
>DroEre_CAF1 26947 96 - 1
UUACCAU-UUGCGACAAAUCGCAUUAGGCCCGGACUGUCG-----------------ACUCGACUGUCUCCACGGUGGUAUGGUAUACUCGUAUAGUGCUAUGCCCUUAAGCUC
..(((..-.(((((....)))))...((...((((.((((-----------------...)))).))))))..)))((((((((((.........))))))))))......... ( -28.30)
>DroYak_CAF1 28029 110 - 1
UUACCAU-UUGCGACAAAUCGCAUUAGGACCGGACUGUCGACUGGACUGUCGACUCGACUCGACUGUCUCCACU---GUAUGGUAUACGGGUAUAGUGGUCUCCCCAUAAGCUC
.......-.(((((....)))))...((((((((..((((((......))))))..(((......))))))(((---((((.........))))))))))))............ ( -31.20)
>DroAna_CAF1 26137 86 - 1
UUACCAU-UUGCGGCAAAUCGCAUUAGGCUCGGACUGACAA-----------------CUCC---GCAUUCAUA---GUAUAGUCUG----ACUACCAUUCCCCCACUAAACCC
...((..-.(((((....)))))...)).((((((((((..-----------------....---.........---)).)))))))----)...................... ( -14.06)
>consensus
UUACCAU_UUGCGACAAAUCGCAUUAGGCCCGGACAGUCGA_________________CUCGACUGUCUCCACU___GUAUGGUAUA______UACUGCUCUCCCCUUAAGCUC
.((((((..(((((....)))))...((...((((.((((....................)))).))))))........))))))............................. (-12.84 = -14.07 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:08 2006