Locus 185

Sequence ID 3L_DroMel_CAF1
Location 540,502 – 540,622
Length 120
Max. P 0.678797
window268

overview

Window 8

Location 540,502 – 540,622
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.97
Mean single sequence MFE -33.57
Consensus MFE -22.50
Energy contribution -23.88
Covariance contribution 1.38
Combinations/Pair 1.15
Mean z-score -1.84
Structure conservation index 0.67
SVM decision value 0.30
SVM RNA-class probability 0.678797
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 540502 120 - 23771897
UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUUGUCAGUUGACUGCUUGCAAAAGGGGUGUGAACAGAACGACGGGUGGAAACCACCCACAAAAUGUAGUCAGAGCUAGGGCAAAAUC
(((...(((((((........))))))).)))((((((..(((((((((..((.......))..)..........((((((...)))))).......))))))))......))))))... ( -35.40)
>DroSec_CAF1 14550 120 - 1
UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUCGUCAGAUGACUGCUUGCAAAAGGGCUGUGAAACGAGCGACAGGUGAAAACCACCCACAAAAUGUAGUCGGAGGUACGGGAAAAUC
(((...(((((((........))))))).)))((((((...(((((((........(((((........)))....(((....))).))........)))))))...).)))))...... ( -30.99)
>DroSim_CAF1 15451 120 - 1
UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUUGUCAGUUGACUGCUUGCAAAAGGGGUGUGCAACGAGCGACGGGUGGAAACCACCCACAAAAAGUAGUCAGGGGUACGGGAAAAUC
(((...(((((((........))))))).)))((((((..((((((((((.......((((((((.....)).)).(((....))))))).....))))))))))..).)))))...... ( -36.80)
>DroEre_CAF1 14955 118 - 1
UUCAAACGAGUUUAAUGAGACGAGCUCGAGAAUUUGUCAGUUGACUGCUUGCAAAAAGAGUGGGAAUUG--UGUUGGGUGGAAACCACCCACAAAAGUCAGAAAAAGGCACAGGAAAAAC
(((...(((((((........)))))))......((((..((((((.((..(.......)..)).....--(((.((((((...)))))))))..)))))).....))))...))).... ( -31.10)
>consensus
UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUUGUCAGUUGACUGCUUGCAAAAGGGGUGUGAAACGAGCGACGGGUGGAAACCACCCACAAAAUGUAGUCAGAGGUACGGGAAAAUC
(((...(((((((........))))))).)))(((((...(((((((((((((.......)))))..........(((((.....))))).......))))))))....)))))...... (-22.50 = -23.88 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:14 2006