Locus 1831

Sequence ID 3L_DroMel_CAF1
Location 5,137,496 – 5,137,616
Length 120
Max. P 0.573423
window2860

overview

Window 0

Location 5,137,496 – 5,137,616
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.33
Mean single sequence MFE -34.08
Consensus MFE -27.08
Energy contribution -26.95
Covariance contribution -0.13
Combinations/Pair 1.24
Mean z-score -2.28
Structure conservation index 0.79
SVM decision value 0.08
SVM RNA-class probability 0.573423
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5137496 120 - 23771897
GUGCGAGCAAAUCAUUCAGAUGUUCAAUGGUAACACAAUACCGGGUGCCAAAGAUCCCCUGCUGGUUAAGUUUGCCGAUGGCGGACCGAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC
....(((((..((.....)))))))...((((......))))(((((.(...(.(((((...((((.......))))..)).))).)......((((.....))))..).)))))..... ( -29.80)
>DroVir_CAF1 1809 120 - 1
AUGCGAACAAAUUAUACAAAUGUUCAACGGUAACACAAUACCGGGUGCCAAAGAUCCGCUAUUGGUGAAAUUCGCCGAUGGCGGUCCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC
....(((((...........)))))...((((......))))(((((.(...((.((((((((((((.....)))))))))))))).......((((.....))))..).)))))..... ( -41.70)
>DroGri_CAF1 1176 120 - 1
GUGCGAACAAAUUAUACAAAUGUUUAACGGUAACACAAUACCGGGUGCCAAAGAUCCGCUAUUGGUCAAAUUCGCCGAUGGCGGUCCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC
((..(((((...........))))).))((((......))))(((((.(...((.(((((((((((.......))))))))))))).......((((.....))))..).)))))..... ( -36.70)
>DroWil_CAF1 2607 120 - 1
AUGCGAACAAAUCAUUCAGAUGUUCAAUGGUAACACAAUACCGGGUGCCAAAGAUCCAUUAUUGGUGAAAUUCGCCGAUGGUGGACCAAAAAAGAAGAAUCUCUUCAAGACUCCCGAUCC
....(((((..((.....)))))))...((((......))))(((.(.(...(.(((((((((((((.....))))))))))))).)......((((.....))))..).).)))..... ( -36.10)
>DroMoj_CAF1 458 120 - 1
GUGCGAACAAAUUAUACAGAUGUUUAACGGUAACACAAUAACGGGUGCCAAAGAUCCCCUAUUGGUGAAAUUCGCCGAUGGCGGUCCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC
(((...((...(((.((....)).)))..))..))).....((((((.(...((.((.(((((((((.....))))))))).)))).......((((.....))))..).)))))).... ( -32.80)
>DroAna_CAF1 1174 120 - 1
GUGCGAGCAAAUCAUCCAGAUGUUUAAUGGCAACACAAUACCGGGUGGCAAAGAUCCCCUCCUUGUGAAAUUCGCCGACGGUGGACCCAAAAAGAAGAAUCUCUUCAAGACACCCGAUCC
.(((.(..(((.(((....))))))..).))).........((((((.......(((((((...(((.....))).)).)).)))........((((.....))))....)))))).... ( -27.40)
>consensus
GUGCGAACAAAUCAUACAGAUGUUCAACGGUAACACAAUACCGGGUGCCAAAGAUCCCCUAUUGGUGAAAUUCGCCGAUGGCGGACCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC
....(((((..((.....)))))))................((((((.(......((.(((((((((.....))))))))).)).........((((.....))))..).)))))).... (-27.08 = -26.95 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:52 2006