Locus 1830

Sequence ID 3L_DroMel_CAF1
Location 5,137,241 – 5,137,336
Length 95
Max. P 0.721678
window2859

overview

Window 9

Location 5,137,241 – 5,137,336
Length 95
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 80.42
Mean single sequence MFE -30.13
Consensus MFE -17.73
Energy contribution -19.04
Covariance contribution 1.31
Combinations/Pair 1.07
Mean z-score -2.00
Structure conservation index 0.59
SVM decision value 0.40
SVM RNA-class probability 0.721678
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5137241 95 - 23771897
UCCCAAUGGAUUCCGGGUUACAUGAUGA------------CUCAGGUAGAUGAUCAGGUGAGUAGUGGAUAU-----ACAUCCAUUAUGGGUGUAUUUGACACUGGACUGAA
(((....)))..((((((((.....)))------------))).)).......((((.(.(((.((.((.((-----((((((.....)))))))))).))))).).)))). ( -25.40)
>DroSec_CAF1 827 96 - 1
UCCCAGUGGAUACCGGGUUACAUGAUGAC---------AACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUUU-----ACUUCCAUUAUGU--GUAUUUGACACUGGACUGAA
..((((((..(((((((((..........---------))))).)))).....(((((((.((((((((...-----...))))))))..--.)))))))))))))...... ( -31.50)
>DroSim_CAF1 332 96 - 1
UCCCAGUGGAUACCGGGUUACAUGAUGAC---------AACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUUU-----ACUUCCAUUAUGG--GUAUUUGACACUGGACUGAA
..((((((..(((((((((..........---------))))).)))).....(((((((.((((((((...-----...))))))))..--.)))))))))))))...... ( -31.50)
>DroEre_CAF1 821 105 - 1
UCCCAGUGGAUACCCGGUUACAUGAUGACCCAACCGAUCACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUAG-----ACUUCCAUUAUGG--GUAUAUGACACUGGGCUGAA
.(((((((.(((((((((((.....)))))..((((((((.((.....))))))).)))..((((((((...-----...))))))))))--))))....)))))))..... ( -42.00)
>DroYak_CAF1 837 105 - 1
UCACAGUGGAUACCCGGUUACAUGAUGACCCAACCGAUCACUCAGGUAGAUGAUCAGGUGAGUAGUGGAGAU-----ACUUCCAUUAUGU--GUAUAUGACACUGGACUGAA
((.(((((.((((.((((((.....)))))..((((((((.((.....))))))).)))..(((((((((..-----..)))))))))).--))))....)))))))..... ( -29.50)
>DroAna_CAF1 905 109 - 1
UCCCAAUGGAUACCCGGCUAUAUGAUGACCCAGCCGAUCACUCAGGUAGAUGAUCAGGUAAGUGCUGAGUAAUAGCCAAAAACAUAAUG---GUACUGGACUUUAGAUAGAA
..(((..((....))((((((((...(..(..((((((((.((.....))))))).)))..)..)...)).))))))............---....)))............. ( -20.90)
>consensus
UCCCAGUGGAUACCCGGUUACAUGAUGAC_________CACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUAU_____ACUUCCAUUAUGG__GUAUUUGACACUGGACUGAA
..((((((..((((.(((((..((.(((.............)))..))..))))).)))).((((((((...........))))))))............))))))...... (-17.73 = -19.04 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:51 2006