Locus 1815

Sequence ID 3L_DroMel_CAF1
Location 5,099,584 – 5,099,704
Length 120
Max. P 0.670143
window2829

overview

Window 9

Location 5,099,584 – 5,099,704
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -28.15
Consensus MFE -26.52
Energy contribution -26.65
Covariance contribution 0.13
Combinations/Pair 1.06
Mean z-score -1.63
Structure conservation index 0.94
SVM decision value 0.29
SVM RNA-class probability 0.670143
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5099584 120 - 23771897
CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUUGCCAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC
...((((((((((((((((((........)))(((........)))...))))))).((......))........))))))))....(((((((((..((......))..))))))))). ( -28.50)
>DroSec_CAF1 292656 120 - 1
CAAUAAAUUAAUGCUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUUAACAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC
...((((((((.(((((((((........)))(((........)))...))))))..((......))........))))))))....(((((((((..((......))..))))))))). ( -28.20)
>DroSim_CAF1 314299 120 - 1
CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUGGCCAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC
..................(((........)))((((....((((((...(((((((.....)))))))......((..((((((.......))))))..))....))))))))))..... ( -29.40)
>DroYak_CAF1 304946 120 - 1
CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAGGGGCGAAUCGAAUGACACACAUUUGAAAAAUAUUUAAUUUGCCAAAAAUGCCAGUCGAACUGAAUCCCUUGGCAUUUC
.....................(((.((((((((((........))))..(((((((.....)))))))........)))))).))).(((((((((..((......))..))))))))). ( -26.50)
>consensus
CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUUGCCAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC
...((((((((((((((((((........)))(((........)))...))))))).((......))........))))))))....(((((((((..((......))..))))))))). (-26.52 = -26.65 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:23 2006