Locus 1799

Sequence ID 3L_DroMel_CAF1
Location 5,076,655 – 5,076,775
Length 120
Max. P 0.893024
window2796

overview

Window 6

Location 5,076,655 – 5,076,775
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.67
Mean single sequence MFE -39.32
Consensus MFE -39.20
Energy contribution -39.24
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.40
Structure conservation index 1.00
SVM decision value 0.97
SVM RNA-class probability 0.893024
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5076655 120 + 23771897
GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA
.(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -40.20)
>DroSec_CAF1 283048 120 + 1
GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA
.(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -40.20)
>DroSim_CAF1 304326 120 + 1
GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCCCUGCGGUUGACACA
.(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -43.00)
>DroEre_CAF1 290097 120 + 1
GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCAGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA
.(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -38.40)
>DroYak_CAF1 294256 120 + 1
GGUGGUGGCAAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCACUGCACUUUGCUCUGCGGUUGACACA
.(((((((........)))).........(((((.(((((..(((((...)))))..((((.((.....((..((....))..))......)).)))).......))))).)))))))). ( -34.80)
>consensus
GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA
.(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). (-39.20 = -39.24 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:51 2006