Locus 1779

Sequence ID 3L_DroMel_CAF1
Location 5,065,583 – 5,065,702
Length 119
Max. P 0.843520
window2756

overview

Window 6

Location 5,065,583 – 5,065,702
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.73
Mean single sequence MFE -22.98
Consensus MFE -22.72
Energy contribution -22.96
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.22
Structure conservation index 0.99
SVM decision value 0.76
SVM RNA-class probability 0.843520
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5065583 119 + 23771897
UCUCUGGCGAUAAAUCAAGCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA-A
((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -23.90)
>DroSec_CAF1 272126 119 + 1
UCUCUGGCGAUAAAUCAACCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA-A
((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -23.90)
>DroSim_CAF1 293457 119 + 1
UCUCUGGCGAUAAAUCAACCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA-A
((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -23.90)
>DroEre_CAF1 279048 119 + 1
UCUCUGGCGAUAAAUCAGCCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAAGCGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGGAAGGGG-A
((((((.((.....................((((................))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -24.19)
>DroYak_CAF1 282841 120 + 1
UCACUGGCGAUAAAUCAAGCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGUAAGGGGAA
((.(((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).)))))))))).)).((......)).... ( -19.00)
>consensus
UCUCUGGCGAUAAAUCAACCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA_A
((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......)).... (-22.72 = -22.96 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:09 2006