Locus 1778

Sequence ID 3L_DroMel_CAF1
Location 5,065,330 – 5,065,425
Length 95
Max. P 0.985733
window2755

overview

Window 5

Location 5,065,330 – 5,065,425
Length 95
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -24.70
Consensus MFE -15.65
Energy contribution -16.02
Covariance contribution 0.38
Combinations/Pair 1.13
Mean z-score -2.62
Structure conservation index 0.63
SVM decision value 2.02
SVM RNA-class probability 0.985733
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5065330 95 + 23771897
GUUCCCUUUGACAGAACGUAAAGGGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUCGUGGAGUACUGAAAAAGUGUUAGAGAA-AAA--AAA----------------------CAG
(((((((((.((.....)).)))))))))((((..(((((.(((........))).)))))....)))).................-...--...----------------------... ( -18.00)
>DroSec_CAF1 271863 118 + 1
GUUCCCUUUGACAUAACGUAAAGGGGAGCAGUGAAAUGGCAUUACAAAUUAAUAAGUUCAUGGAGUACUGAAAAAGUGUUAGAGAAAAAA--CUACGGAAAAGGUAGGCAGAUAUUUCAG
(((((((((.((.....)).)))))))))..(((((((((........((((((..((((.(.....)))))....))))))........--((((.......))))))...))))))). ( -26.70)
>DroSim_CAF1 293195 117 + 1
GUUCCCUUUGACAUAACGUAAAGGGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUCAUGGAGUACUGAAAAAGUGUUAGAGAA-AAA--CUACGGAAAAGGUAGGCAGAUAUUUCAG
(((((((((.((.....)).)))))))))..(((((((..........((((((..((((.(.....)))))....))))))....-...--((((.......)))).....))))))). ( -25.90)
>DroEre_CAF1 278789 109 + 1
GCUCCCUUUGACAAAACGCAAAGCGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUGGUGGAACACUGAAAAAGUGUUCGAUUA-AAACAGUACGGAAAAAGUAGGCU----------
((((((((((........))))).))))).((((.......))))...........(((((.(((((((.....))))))).))))-).....(((.......)))....---------- ( -28.20)
>consensus
GUUCCCUUUGACAUAACGUAAAGGGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUCAUGGAGUACUGAAAAAGUGUUAGAGAA_AAA__CUACGGAAAAGGUAGGCA_______CAG
(((((((((.((.....)).)))))))))((((..(((((.(((........))).)))))....))))................................................... (-15.65 = -16.02 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:08 2006