Locus 1769

Sequence ID 3L_DroMel_CAF1
Location 5,058,136 – 5,058,256
Length 120
Max. P 0.500000
window2739

overview

Window 9

Location 5,058,136 – 5,058,256
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -27.02
Consensus MFE -25.22
Energy contribution -25.22
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.93
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5058136 120 - 23771897
AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA
(((((((((.(((...(((.......))).....((((((............))))))..)))...))))))))).......((((...(((((((.........)))))))...)))). ( -26.60)
>DroSec_CAF1 264588 120 - 1
AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA
(((((((((.(((...(((.......))).....((((((............))))))..)))...))))))))).......((((...(((((((.........)))))))...)))). ( -26.60)
>DroSim_CAF1 285925 120 - 1
AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA
(((((((((.(((...(((.......))).....((((((............))))))..)))...))))))))).......((((...(((((((.........)))))))...)))). ( -26.60)
>DroEre_CAF1 271358 120 - 1
AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCACAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCCUAUCGAAUGGCAAUUA
(((((((((.((....(((.......)))........((((((.(((.....)))))))))))...)))))))))..........................(((........)))..... ( -27.50)
>DroYak_CAF1 275025 120 - 1
AUGUUUCUUGGCCAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAUGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA
..........(((((.(((.......)))...((((((((...((....)).)))))).((((..(((((......((((((....))))))...))))).))))...)))))))..... ( -27.80)
>consensus
AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA
(((((((((.((....(((.......)))........((((((.(((.....)))))))))))...))))))))).......((((...(((((((.........)))))))...)))). (-25.22 = -25.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006