Locus 1768

Sequence ID 3L_DroMel_CAF1
Location 5,057,857 – 5,057,963
Length 106
Max. P 0.511016
window2738

overview

Window 8

Location 5,057,857 – 5,057,963
Length 106
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 92.16
Mean single sequence MFE -19.76
Consensus MFE -14.98
Energy contribution -15.38
Covariance contribution 0.40
Combinations/Pair 1.09
Mean z-score -1.58
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.511016
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5057857 106 - 23771897
ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUUCUGCAUAAGUAUAUCCAAACAUUCGGACAGAUAU------GCAUGGGCAAAAAUGCAGGGACGGUAAAAAUGC
...............................(((..(..((((((.......(((........)))......(------((....)))...))))))..)..)))....... ( -16.40)
>DroSec_CAF1 264310 106 - 1
ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUAUCCGAACAUCCGGACAGAUAU------GCAUUGGCAAAAAUGCAGGGACGGUAAAAAUGC
...............................(((..(((((((((.......((((......))))......(------((....)))...)))))))))..)))....... ( -21.60)
>DroSim_CAF1 285642 112 - 1
ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUAUCCGAACAUCCGGACAGAUAUGCAUAUGCAUUGGCAAAAAUGCAGGGACGGUAAAAAUGC
...............................(((..(((((((((..(((((((((......))))....)))))...(((....)))...)))))))))..)))....... ( -24.50)
>DroEre_CAF1 271084 105 - 1
ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUUCUGCAUAAGUAUUUCCGUAUAUCCG-ACAGAUAU------GCAUUGGCUAAAAUGCAGGGACGGUAAAAAUGC
...............................(((..(..((((((.(((......(((((((..-...)))))------))....)))...))))))..)..)))....... ( -18.90)
>DroYak_CAF1 274741 106 - 1
ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUUUCCGUUUAUCCAAACAGAUAU------GCAUUGGCUAAAAUGCAGGGGCGGUAAAAAUGC
...............................(((..(((((((((..((((.((.((((....)))).)).))------)).((.....)))))))))))..)))....... ( -17.40)
>consensus
ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUAUCCGAACAUCCGGACAGAUAU______GCAUUGGCAAAAAUGCAGGGACGGUAAAAAUGC
...............................(((..(((((((((..((((.((((......))))...))))......((....))....)))))))))..)))....... (-14.98 = -15.38 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:51 2006